Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02330 GATCCATGGGCCTTGGTGCGAATAAGTTTCATTTTCATGCTGGGCTTCAAAGTACAAAGAAGAGGGAACATTGCAATCGAAGTTAGGTTTTGGTTTTGGTACTTTCGTGAAGTGAACCAAATTTTCTTTGCTAGTGTTATCTTTCATCTCATCACCATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAGTACATGGACAAGAAGCTTCAGATTAAACTGAATGCTAATCGCATGATTGTTGGTACTCTCCGTGGCTTTGATCAGTTTATGAATTTAGTTGTTGACAACACCGTGGAAGTGAATGGCAATGAGAAAACCGACATAGGGATGGTGGTAATTAGAGGAAATAGTGTGGTCACTGTTGAGGCGCTTGAACCCGTGAACAGAGCCTGA 396 0.4242 DPWALVRISFIFMLGFKVQRRGNIAIEVRFWFWYFREVNQIFFASVIFHLITMSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRA 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02330 131 CDD Sm_G 58 126 IPR034098 GO:0000387|GO:0005681
Vimu6g02330 131 ProSiteProfiles Sm domain profile. 57 128 IPR047575 GO:0003723
Vimu6g02330 131 SMART Sm3 60 124 IPR001163 -
Vimu6g02330 131 FunFam Small nuclear ribonucleoprotein G 53 128 - -
Vimu6g02330 131 Gene3D - 51 129 - -
Vimu6g02330 131 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN 55 130 IPR044641 -
Vimu6g02330 131 Pfam LSM domain 61 123 IPR001163 -
Vimu6g02330 131 SUPERFAMILY Sm-like ribonucleoproteins 61 128 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02330 Vimu-Chr6 20372062 20376067 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02330 K11099 - sind:105174044 157.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02330 6 20372062 20376067 Vimu6g02330 6 20372062 20376067 ECH