Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02327 ATGGTTTTCCCTAAGTTTAACACTACTTTTCTTTTTCTTTTATGGCTTCTATTACTCATCAACAATGGCGTTGAAGCTTTTCATAAAGTATATCCGCATCTTCAATCCGTTTCAACAATTTCCGTCGGTACACAACACAGAACTGGATACCATTTTCAACCTCCTAAACACTGGATCAATGGTGTAAAGATTTGTGATTTTGCGAGCAACACAGGACCCATGTACTTCAACGGATTCTACCATTTATTCTATCAATACAATCCGAACGGTTCGGTGTGGGGGAACATAGTGTGGGCACACTCAGTATCGAAGGATCTGATAAACTGGGAAGCTGTTGAACACGCGCTGTACCCATCCAAGTCTTTCGACAAATACGGGTGCTGGTCGGGCTCGGCGACAATAGTCCCAGGTATTGGACCCGTAATCCAGTACACTGGAATCGCAGACGAGAAACAAACTCAAGTCCAATGTTACGCTATACCAGAAGACCTCAAGGATCCGCACCTCCGGAAATGGGTAAAACCCGACGATTCGAACCCGTTTGTGGTCGCCGAAAACCCTGTGAACGGTAGTGCGTTTAGGGACCCGACAACGGCTTGGTGGAGCAAAGATGGACACTGGAGAATAGTGGTGGGAAGCAGAAGGAAGGATAGAGGAGTGGCTTATATGTACAGAAGCAAAGACTTTAAGAAATGGGTCCGGTCCAAACACCCGCTCCATTCGAGGAAAGACACGGGTATGTGGGAGTGCCCCGATTTTTACCCGGTTTCGCTTAAAAGCAATTTGGGGATGGACGCGTCGGCGGAGGGAAATCAAACGAAACACGTGCTGAAAAATAGTCTTGATGTGACTAGGTATGAATACTACACTTTGGGAACATATCGTAGGGATAAGGATAGGTATGTTCCTGACAAAACATCAGAAGATGGTTGGGGTGGATTAAGGTATGATTATGGCAATTTTTATGCTTCCAAGTCCTTTTTTGATCCTAGCAAGAACAGAAGAGTGATATGGGGTTGGGCAAACGAGTCTGATACCAAAGAAGACGATGTTCGTAAAGGATGGGCAGGGATTCAGGCGATTCCGCGAACGGTGTGGCTGGATACAAATCAGAGGCAATTGTTACTGTGGCCAGTTGAAGAATTGAATAATCTTAGAGGAAAAGAAGTTAACATGAACAATCAGAAGCTTGAGAAGGGAGAGAAAGTTGAAGTAAAAGGAATCACTGCTGCACAGGCAGATCTGGAGGTTGAATTTTCAATTCCAAGTTTGGAGAAAGCAGAGAAATATGATGATAAGTGGGTTGATGCACAGGAAGCTTGTGCCAATAAGGGTTCAAATGTGGAAGGTGGTGTTGGACCATTTGGGATTTTGACTTTGGCTTCTGAAAAGCTGGAGGAGTTTACTCCTGTGTTTTTCAGAATTTTCAAAGATAAAAAGAAGCACGTCATTCTCATGTGCTCTGATGCAAGAAGATCGTCTTTAAAGGGTGATTTGTATAAGCCGACATTTGGTGGCTTTGTGGACTTGGATTTGACAAAGGATAAGAAAATTTCTCTTAGGAGTTTGATTGATCACTCAGTTGTGGAAAGTTTTGGAGCAGGAGGAAAGACAATCATATTGTCTCGAGTTTATCCGCAACTTGCAGTGTTAAAGCAAGCTCATCTTTTTGTGTTCAACAATGGCACTGAACCTATCACCATGGAAAAGCTAAAAGGATGGGACATGAAATCTGCTCAAATCAAATGA 1749 0.4345 MVFPKFNTTFLFLLWLLLLINNGVEAFHKVYPHLQSVSTISVGTQHRTGYHFQPPKHWINGVKICDFASNTGPMYFNGFYHLFYQYNPNGSVWGNIVWAHSVSKDLINWEAVEHALYPSKSFDKYGCWSGSATIVPGIGPVIQYTGIADEKQTQVQCYAIPEDLKDPHLRKWVKPDDSNPFVVAENPVNGSAFRDPTTAWWSKDGHWRIVVGSRRKDRGVAYMYRSKDFKKWVRSKHPLHSRKDTGMWECPDFYPVSLKSNLGMDASAEGNQTKHVLKNSLDVTRYEYYTLGTYRRDKDRYVPDKTSEDGWGGLRYDYGNFYASKSFFDPSKNRRVIWGWANESDTKEDDVRKGWAGIQAIPRTVWLDTNQRQLLLWPVEELNNLRGKEVNMNNQKLEKGEKVEVKGITAAQADLEVEFSIPSLEKAEKYDDKWVDAQEACANKGSNVEGGVGPFGILTLASEKLEEFTPVFFRIFKDKKKHVILMCSDARRSSLKGDLYKPTFGGFVDLDLTKDKKISLRSLIDHSVVESFGAGGKTIILSRVYPQLAVLKQAHLFVFNNGTEPITMEKLKGWDMKSAQIK 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02327 582 SUPERFAMILY Arabinanase/levansucrase/invertase 42 379 IPR023296 -
Vimu6g02327 582 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 18 581 - -
Vimu6g02327 582 SMART glyco_32 51 536 IPR001362 GO:0004553|GO:0005975
Vimu6g02327 582 CDD GH32_Fruct1-like 57 367 - -
Vimu6g02327 582 Gene3D Glycosyl hydrolase domain; family 43 70 391 IPR023296 -
Vimu6g02327 582 SUPERFAMILY Concanavalin A-like lectins/glucanases 378 579 IPR013320 -
Vimu6g02327 582 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 390 576 - -
Vimu6g02327 582 Pfam Glycosyl hydrolases family 32 C terminal 381 574 IPR013189 -
Vimu6g02327 582 Gene3D - 392 576 - -
Vimu6g02327 582 Pfam Glycosyl hydrolases family 32 N-terminal domain 51 378 IPR013148 -
Vimu6g02327 582 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 56 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02327 Vimu-Chr6 20345067 20348520 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02327 23 576 Glycoside Hydrolase AT2G36190 63.251 0.0 735
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02327 K01193 - gmx:100799008 919.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02327 6 20345067 20348520 Vimu6g02327 6 20345067 20348520 ECH