Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02320 ATGGATTCCGTTGAAGTCAACTTCAGCATTCAAAGCCACACAGAGGCAAAACAAGGCGTTCACACGTATGCTGCTCAGTGGCCGATTTCCTCTCTGGCATGGTCGATGCGTCGTGACAAAAGCCCTCGCCTTGCCATTGGCAGTTACCTGGAAGATTACACCAACAAGGTTGAACTTGTCCATTTCAACAACGACACCTTCAATTTCACCACCGACCCTCGTCTGGTGTTTGATCACCCTTATGCACCCACAAACATCATGTTCTTTCCCTCCGAGGATGACACCAATCCAGACCTCATTGCCACCTCAGGCGACAACCTCAGATTGTGGGAAATCCACGAAGACCACATTCAACTGAAGTCCCCGCTAATTGGTAACAAAGTCAGCGATCACTCGGCAATTACCTCTTTTGATTGGGCAGTGTTTGACACTCGTCTTATAGCCACTTCTAGTGTGGACACCACATGCACCATCTGGGACATTGAGAGGGAAGTCATGAAGGCACAGCTAGTAGCACACGACAAAGAAGTGTACGACATTTCATGGGGTGGGTTCAATGTGTTTGCTTCCGTGTCAGGTGATGGTTCAGTGAGGGTGTTTGACTTAAGAGACAAGGAGAAATCTACCATAATTTATGAAAACCCTGTGCAGGATTGTCCCTTGCTGCGATTAGAATGGAACAAAAGCGATCCAAGATTTATGGCGACAGTGGGATTGGACAGCAACAAGGTGGTGATATTGGATATCAGGCTTCCGACCACACCGTTTATGGAGTTGAGTAAACATCGAACATGTGTTAATGCGATGTCATGGTCCCCAGATTTTGGACGACATCTGTGTTCTGTTGGCGATGATGCAAGGGCCTTCATCTGGGATGTTATGGACTCAAGGTTTCCATCAAGGAATGGTTGTGATGTGGAGCCAATGATGTGGTACGGTTCACCGGCTGAAATCAATCAGGTCCGTTGGTCCCCAATGCAGGTCGATTGGATTGCGCTTGCTTTCTTCAACAACTTACAACTGCTCAAAGTGTAG 1035 0.4754 MDSVEVNFSIQSHTEAKQGVHTYAAQWPISSLAWSMRRDKSPRLAIGSYLEDYTNKVELVHFNNDTFNFTTDPRLVFDHPYAPTNIMFFPSEDDTNPDLIATSGDNLRLWEIHEDHIQLKSPLIGNKVSDHSAITSFDWAVFDTRLIATSSVDTTCTIWDIEREVMKAQLVAHDKEVYDISWGGFNVFASVSGDGSVRVFDLRDKEKSTIIYENPVQDCPLLRLEWNKSDPRFMATVGLDSNKVVILDIRLPTTPFMELSKHRTCVNAMSWSPDFGRHLCSVGDDARAFIWDVMDSRFPSRNGCDVEPMMWYGSPAEINQVRWSPMQVDWIALAFFNNLQLLKV 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02320 344 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 259 293 - -
Vimu6g02320 344 SMART WD40_4 252 292 IPR001680 GO:0005515
Vimu6g02320 344 SMART WD40_4 70 111 IPR001680 GO:0005515
Vimu6g02320 344 SMART WD40_4 121 160 IPR001680 GO:0005515
Vimu6g02320 344 SMART WD40_4 207 248 IPR001680 GO:0005515
Vimu6g02320 344 SMART WD40_4 163 201 IPR001680 GO:0005515
Vimu6g02320 344 Pfam WD domain, G-beta repeat 129 160 IPR001680 GO:0005515
Vimu6g02320 344 Pfam WD domain, G-beta repeat 170 201 IPR001680 GO:0005515
Vimu6g02320 344 SUPERFAMILY WD40 repeat-like 28 338 IPR036322 GO:0005515
Vimu6g02320 344 ProSitePatterns Trp-Asp (WD) repeats signature. 279 293 IPR019775 -
Vimu6g02320 344 Gene3D - 14 340 IPR015943 GO:0005515
Vimu6g02320 344 ProSiteProfiles Trp-Asp (WD) repeats profile. 170 210 IPR001680 GO:0005515
Vimu6g02320 344 PANTHER WD REPEAT CONTAINING PROTEIN 11 344 IPR045159 -
Vimu6g02320 344 ProSiteProfiles Trp-Asp (WD) repeats profile. 259 301 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02320 Vimu-Chr6 20297639 20300430 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02320 K11805 - zju:107416321 527.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02320 6 20297639 20300430 Vimu6g02320 6 20297639 20300430 ECH