Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02319 ATGGCAGGGGCGGAGAATAGCGACGGGAGCGGGAGTGAACGGGAATTAGCGGGAACTGGTAACAACGGGTTTTTGGAGTGTAGTGGTTCTGCTGGTAGTGAAGGGAACGACAGCGTTTCTTATGCGAACGTCTTGCGTTCGAGGAACAAGTTTGCTGACGCTCTTGCTATCTACGAGCGTGTCTTGGAGAGCGATGGTGCAAATGTGGAGGCTCTCATTGGGAAAGGGATATGCCTTCAGATGCAGAATAAGGGAAGGCTTGCGTTTGAGAGTTTTTTTGAGGCTATCAAGCTGGATCCTCAAAATGCTCGTGCTCTCACACATTGCGGCATTTTGTATAAGGACGATGGTCGCCTGGTGGAGGCTGCAGAGGTATGCCTACCTCTGTTTAATAACTTCGGTTGCTCAAATTGTTGCTTCGCCTTTTTCTTTTCTGTTGTATTGTTTCTTCAGAATGATCAACTGTTAGCAATGTGGATGATGTCTTTTATCACAGCAAAAGTTTCCTATTCTTTTTAG 519 0.4663 MAGAENSDGSGSERELAGTGNNGFLECSGSAGSEGNDSVSYANVLRSRNKFADALAIYERVLESDGANVEALIGKGICLQMQNKGRLAFESFFEAIKLDPQNARALTHCGILYKDDGRLVEAAEVCLPLFNNFGCSNCCFAFFFSVVLFLQNDQLLAMWMMSFITAKVSYSF 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02319 172 Gene3D Tetratricopeptide repeat domain 33 129 IPR011990 GO:0005515
Vimu6g02319 172 ProSiteProfiles TPR repeat profile. 69 102 IPR019734 GO:0005515
Vimu6g02319 172 MobiDBLite consensus disorder prediction 1 20 - -
Vimu6g02319 172 PANTHER UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE SPINDLY-RELATED 34 126 - -
Vimu6g02319 172 SMART tpr_5 69 102 IPR019734 GO:0005515
Vimu6g02319 172 SMART tpr_5 35 68 IPR019734 GO:0005515
Vimu6g02319 172 SUPERFAMILY TPR-like 41 125 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02319 1 124 Glycosyltransferase AT3G11540 59.559 5.63e-43 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02319 K09667 - ccaj:109794864 214.927