Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02316 ATGTCTCAGACCAAGAAATTGACGCCGAATCTGGATCAGCAGAGCACGAAGGTGCTGAATCTAACGGTGCTCCAGCGAATCGATCCATTCATCGACGAGATTCTCTTCACCGCCGCTCATGTCTCCTTCTACGACTTCAACATCGAAACCAACCAGTGGAGTCGCAAGGATGTCGAAGGATCTCTCTTCGTTGTCAAGAGGAATTCACAGCCACGGTTTCAGTTTATCGTAATGAATCGACGAAGTACAGATAACCTTGTGGAGAATCTATTGGATTTTGAGTATGAACTAAAAAGCCCGTACCTATTATATCGGAATGCTGCTCAAGAAGTTAATGGTATATGGTTTTATAATCCAGACGAATGCGAGGAAGTTGCAAATCTTTTTAACAGGATACTTAATCTGTACCCAAAGGCACCTCCAACTACCACAACGCCTGCTAACAGAAGTGAGTTTGAGGAACATCAGCCAGTGTCAGTGATATCAGGAAGCCCTCTAGAATCGTCTTCAGCTGCTGCTTCTGCAATTGATGCTGTTGAAGATGCTGTATTTTCAAACTTTTGCACCGTATATGATGTTACATTGAAGGATACTAGAAGTTATACTCCCGCTATAAAAAATGGTAGACAGAATTCTACTTCTATCACTTCTGCTGCTCCAAGTGGTTTATTTTCTCCTGCACCTACTGTCCAGATACCTGCTTCTCATTCAACTTCATCTATATCAGGCTTACCTGTTGACTCTCTTGAAACAGTCAAGAATGGAAATCAAGCCATTAATCTTGTTAAGCCTTCTACTTTTTTCACATCCACTTCATCATCACTGTTAGTTCCACCTATTTCTTCATCTGTGCTACCTAGTTCAGTTGGTAATCATTCCCTGAATATGCCACGACCATATGGCACACCAGTACTTCAACCCTTCCCGCCCCCTATTCCTCCTCTCTCTCTTACACCCATTTCAAGCTCCAGTCCAAATAAACCTGTAATTGGAAGGGATAGCGTTCGCAATGCACTTTTATCATTGGTTCAGGTACTTCACAATTTTGCCATCTTTGTTTAG 1062 0.4237 MSQTKKLTPNLDQQSTKVLNLTVLQRIDPFIDEILFTAAHVSFYDFNIETNQWSRKDVEGSLFVVKRNSQPRFQFIVMNRRSTDNLVENLLDFEYELKSPYLLYRNAAQEVNGIWFYNPDECEEVANLFNRILNLYPKAPPTTTTPANRSEFEEHQPVSVISGSPLESSSAAASAIDAVEDAVFSNFCTVYDVTLKDTRSYTPAIKNGRQNSTSITSAAPSGLFSPAPTVQIPASHSTSSISGLPVDSLETVKNGNQAINLVKPSTFFTSTSSSLLVPPISSSVLPSSVGNHSLNMPRPYGTPVLQPFPPPIPPLSLTPISSSSPNKPVIGRDSVRNALLSLVQVLHNFAIFV 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02316 353 PANTHER TRANSCRIPTION FACTOR SMIF DECAPPING ENZYME DCP1 10 349 IPR010334 GO:0000290|GO:0008047|GO:0043085
Vimu6g02316 353 CDD EVH1-like_Dcp1 19 133 - -
Vimu6g02316 353 Gene3D - 7 135 IPR011993 -
Vimu6g02316 353 FunFam mRNA-decapping enzyme-like protein 9 135 - -
Vimu6g02316 353 Pfam Dcp1-like decapping family 17 130 IPR010334 GO:0000290|GO:0008047|GO:0043085
Vimu6g02316 353 SUPERFAMILY PH domain-like 19 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02316 Vimu-Chr6 20256088 20258411 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02316 K12611 - gmx:100786833 449.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02316 6 20256088 20258411 Vimu6g02316 6 20256088 20258411 ECH