Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02308 ATGGCAAGCTCAAGCTCTGTGACCAACAGAAGGTTGGAAGGAAAAGTTGCATTGATAACAGGAGGAGCTAGTGGAATTGGGAAACGCACCGCAGAAGTGTTCGCCCAGCACGGAGCCAAAGTAGTGATCGCTGACATCCAAGACGAATTGGGGCATTCAGTGGCTGAGTCCATAGGGTCATCTATTTGTTCTTATGTTCACTGCGATGTGACCGATGAGAATCAGGTCAAAAACGCTGTCCACACAGCCCTCGAAACTTATGGCAAGCTAGACATCATGTTCAACAACGCCGGCATAGTTGATCCCAACAAGCATCGAATCATTGATAACGATAAGGCAGATTTTGAACGTGTTCTCAGCGTCAATGTTACAGGTGTTTTCCTCGGGATGAAGCATGCGGCACAGGCGATGATCCCAGCACGCAGTGGCAGCATTATCTCAACGGCGAGCATAAGCTCTTACGTCGGAGGTGCAGCTTCCCATGCATATTGTTGTGCCAAGCACGCGGTGGTTGGTCTAACTAAAAATGCAGCGGTTGAGCTCGGACAGTTCGGAATCAGGGTGAATTGTTTGTCACCTTACGCTCTTGCCACTCCGTTGGCCACCAGCTTCGTCGGAGCTGATGATGAACAGCTTGAGGCTATCATGAACTCACTCGCTAATCTCAAGGGTGTCACCCTCAAAACTGACGATGTTGCCAATGCTGCACTCTATTTTGCTAGTGATGATTCAAGCTACGTCAGTGGCCATAATTTGCTCATAGATGGAGCTTTTAGCATTGTTAATCCTTCCTTTAACATGTTTCAGTACCCCCAATCTTGA 822 0.4818 MASSSSVTNRRLEGKVALITGGASGIGKRTAEVFAQHGAKVVIADIQDELGHSVAESIGSSICSYVHCDVTDENQVKNAVHTALETYGKLDIMFNNAGIVDPNKHRIIDNDKADFERVLSVNVTGVFLGMKHAAQAMIPARSGSIISTASISSYVGGAASHAYCCAKHAVVGLTKNAAVELGQFGIRVNCLSPYALATPLATSFVGADDEQLEAIMNSLANLKGVTLKTDDVANAALYFASDDSSYVSGHNLLIDGAFSIVNPSFNMFQYPQS 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02308 273 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 150 178 IPR020904 GO:0016491
Vimu6g02308 273 Gene3D - 2 269 - -
Vimu6g02308 273 Pfam Enoyl-(Acyl carrier protein) reductase 21 256 - -
Vimu6g02308 273 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 7 262 - -
Vimu6g02308 273 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 13 261 IPR036291 -
Vimu6g02308 273 FunFam Short-chain dehydrogenase reductase 1 262 - -
Vimu6g02308 273 PRINTS Glucose/ribitol dehydrogenase family signature 88 99 IPR002347 -
Vimu6g02308 273 PRINTS Glucose/ribitol dehydrogenase family signature 137 153 IPR002347 -
Vimu6g02308 273 PRINTS Glucose/ribitol dehydrogenase family signature 184 201 IPR002347 -
Vimu6g02308 273 PRINTS Glucose/ribitol dehydrogenase family signature 16 33 IPR002347 -
Vimu6g02308 273 PRINTS Glucose/ribitol dehydrogenase family signature 163 182 IPR002347 -
Vimu6g02308 273 PRINTS Glucose/ribitol dehydrogenase family signature 222 242 IPR002347 -
Vimu6g02308 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 182 IPR002347 -
Vimu6g02308 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 151 IPR002347 -
Vimu6g02308 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 88 99 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02308 Vimu-Chr6 20180317 20181711 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02308 10 258 Miscellaneous Gene Families AT4G05530 33.333 1.95e-28 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02308 - - vra:106757419 508.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02308 6 20180317 20181711 Vimu6g02308 6 20180317 20181711 ECH