Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02307 ATGGTTATGCTTGAAGGAAAAGTGGCGATAATCACCGGAGGAGCTAGCGGCATCGGAGCCGCCACCGCCAAACTATTCCTCCAACACGGTGCCAAAGTGATCATTGCAGACGTGCAAGATGCTTTAGGCCACTCCCTCTGCAAAACCTTCAGCACCAACACTCCCATTCACTACCTTCACTGCGACGTAACAAGCGACTCGGACGTCAAAAACGTGGTGGAAGTCGCCATAACCAAATACGGAAAACTCGACATAATGTTCAATAATGCCGGCATCTCGGGAGACTCGAACAGATCCGTAGTAGAATCCGATGAGGAAAATTTCAAAAGAGTTTTCGAGGTTAATGTGTACGGAGCTTTCTTGGGCTCCAAGCATGCGGCGAGGTTCATGGTTCCAGCGAAGAGAGGGGTGATTCTCTTCACTTCGAGCATTGCTTCGCTTCTGGGTGGCGAAACGGCGCATGCTTACGCCGTTTCAAAGCACGCGGTGGTGGGACTGATGAAGAACCTGTGCGTTGAACTGGGGCAGCATGGGATCAGAGTGAATTGCGTTTGTCCAGGTGGCATTCCCACTCCGATGCTGAACAAGGCGTTGAAGATGAACAAGAAGGAGACACAGGAATTGCTGTGCAAGGTTGCGGTGTTGAAAGGTACGGTTCTTGAAGCTGAAGACATAGCAAAAGCTGCGTTATATTTGTGCAGCGACGAGGCGAAGTTCGTGAGTGGAGTTAACCTTGTTCTGGACGGTGGTTATAGCACCACCAACATGTCATTCACTTCAGTGCTGAATGGTCTCATGGATAACTACACCAACAACATCGACAGCAACAACCATGCTTAA 840 0.4976 MVMLEGKVAIITGGASGIGAATAKLFLQHGAKVIIADVQDALGHSLCKTFSTNTPIHYLHCDVTSDSDVKNVVEVAITKYGKLDIMFNNAGISGDSNRSVVESDEENFKRVFEVNVYGAFLGSKHAARFMVPAKRGVILFTSSIASLLGGETAHAYAVSKHAVVGLMKNLCVELGQHGIRVNCVCPGGIPTPMLNKALKMNKKETQELLCKVAVLKGTVLEAEDIAKAALYLCSDEAKFVSGVNLVLDGGYSTTNMSFTSVLNGLMDNYTNNIDSNNHA 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02307 279 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 143 171 IPR020904 GO:0016491
Vimu6g02307 279 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 253 IPR036291 -
Vimu6g02307 279 Pfam Enoyl-(Acyl carrier protein) reductase 13 252 - -
Vimu6g02307 279 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 4 255 - -
Vimu6g02307 279 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 IPR002347 -
Vimu6g02307 279 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 IPR002347 -
Vimu6g02307 279 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 IPR002347 -
Vimu6g02307 279 PRINTS Glucose/ribitol dehydrogenase family signature 215 235 IPR002347 -
Vimu6g02307 279 PRINTS Glucose/ribitol dehydrogenase family signature 130 146 IPR002347 -
Vimu6g02307 279 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Vimu6g02307 279 PRINTS Glucose/ribitol dehydrogenase family signature 81 92 IPR002347 -
Vimu6g02307 279 PRINTS Glucose/ribitol dehydrogenase family signature 156 175 IPR002347 -
Vimu6g02307 279 PRINTS Glucose/ribitol dehydrogenase family signature 177 194 IPR002347 -
Vimu6g02307 279 FunFam Short-chain dehydrogenase reductase 1 258 - -
Vimu6g02307 279 Gene3D - 2 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02307 Vimu-Chr6 20171005 20172453 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02307 4 262 Acyl Lipid Metabolism Gene Families AT3G55290 31.203 2.70e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02307 - - var:108327580 522.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02307 6 20171005 20172453 Vimu6g02307 6 20171005 20172453 ECH