Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02305 ATGGGCAACGCTCAATCACCTTCCAACAATGATCCTCGATATGTTTCTGCAGCCAGAGCTTTTACTCAAAAGGAACTTGAAGACTTGAGGTCTCTGTTCAATCATCTGGCAGCTCAATCACAGAATAACGCCAAATGCATCTCTCCCCCAGTTTTTCAGTCATATTTTGGACTTCATGGACCTCTTGGGGAGAGGATGTTTGATTTAGTTACTCAAGAGCGCAAGGATCAAAGGTTAACCTTTGAGGACCTCGTTGTTGCTAAAGCTACTTATGAGAAAGGGACAAAAGATGAAATTGAAGAGTTCATCTTTCGCCTATTAGACGTATCTGGAGATAATTTTATAACGAGGTCTGATTTGAAAATTGTTATGATCGCCATTTTTAACAATATATTATGCATAAAAGATTCTCAGGACAGATCAAGTTCACATGAGGACATTGTTAACATATTTCTGAATGCTGCAAAATTCTCCATGCATAATGAAGGGGGCACCGAGGAGACTATGTCTTTTGAAGATTTCAGAAACTGGTGTACTCATCTCCCATCTGTGAAGAAGCTTCTTGGAAGCCTACTACTGCCACCTGGTTCGGGACGACCTGGTTCTCAGATTCCTAAACTATTAACTTCAACGGCTATTGATTCTAACATTATACTTTTAAGAAAGGAATATGCTTGGCATATTGGAGGCGCACTCTCTCAGCATGACCTGGAAGATTGGAAGCTTTTGTATCATAGTTCTGTTAATGGTCTTAGTTTTAATACATTCTTGGGCAACATTTCAGGGGATTTTGAATTGCTTGGCTTATTCACTATAACAACGTCTCCAGTATATTTAAATATTGAAGTGTTGCAGGCTTTGTGTGCTGGTTGTACTGCTACTTCGTTTAGTGCTTTTAATGCAGTATATTCCTTAGAAAGTGTTCATTTGAGATATCTAAAATACTGCAAGCACTCGTGTGCTATCAACTTCACTTCAGAGGACATTCCAAATGGCATTGGTTTTGGGGGACGAGTCAATCACTTCGGTTTGTTTGTATCAGCAAACTTTGATCAAGGACATACATTTTCGTGTACCACGTTTGGTAGCCCTTGCCTCTCCAAGACTAATCGTATATTGCCAGAAGTAATAGAATGCTGGGGAGTGACTCAAGTTGCAACGCAAGACAAACATGATGCTGTCAAAGGCACTGTTCTGGAGAGGTTCAAGGAAGATCGCAATATGCTTAAAATGGTTGGGCTTGCAAATTCCAGCGAGTAG 1260 0.4024 MGNAQSPSNNDPRYVSAARAFTQKELEDLRSLFNHLAAQSQNNAKCISPPVFQSYFGLHGPLGERMFDLVTQERKDQRLTFEDLVVAKATYEKGTKDEIEEFIFRLLDVSGDNFITRSDLKIVMIAIFNNILCIKDSQDRSSSHEDIVNIFLNAAKFSMHNEGGTEETMSFEDFRNWCTHLPSVKKLLGSLLLPPGSGRPGSQIPKLLTSTAIDSNIILLRKEYAWHIGGALSQHDLEDWKLLYHSSVNGLSFNTFLGNISGDFELLGLFTITTSPVYLNIEVLQALCAGCTATSFSAFNAVYSLESVHLRYLKYCKHSCAINFTSEDIPNGIGFGGRVNHFGLFVSANFDQGHTFSCTTFGSPCLSKTNRILPEVIECWGVTQVATQDKHDAVKGTVLERFKEDRNMLKMVGLANSSE 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02305 419 PANTHER NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED 131 382 - -
Vimu6g02305 419 SUPERFAMILY EF-hand 6 191 IPR011992 -
Vimu6g02305 419 SMART 109ultra 219 383 IPR006571 -
Vimu6g02305 419 Gene3D - 3 190 - -
Vimu6g02305 419 Pfam TLD 242 382 IPR006571 -
Vimu6g02305 419 ProSiteProfiles EF-hand calcium-binding domain profile. 95 130 IPR002048 GO:0005509
Vimu6g02305 419 ProSitePatterns EF-hand calcium-binding domain. 108 120 IPR018247 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02305 103 418 EF-hand Containing Proteins AT5G06260 48.182 1.43e-106 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02305 - - gmx:100804508 607.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02305 6 20160258 20164807 Vimu6g02305 6 20160258 20164807 ECH