Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02302 ATGGCCCTATCCCGTGGATCCATCCTCACTCGATCAGTGTGGTCCTCTAATTTGGAATCGGAATTCGAGTTAATCCGATCCGTCATCGACTCCTTCCCTCTCATATCGATGGACACAGAGTTCCCCGGTGTTGTTGTGCGCCCCGACACCGGCGACCCCTCTTTTCGCCACCGCGAACCAGCCGCCCACTACGCCGTGCTTAAGGCCAACGTCGACCGCCTCCACCTGATCCAGATCGGTCTCACTCTCTCCGATCAACTGGGAAACCTTCCCACACTCGGCACCTCCAATGGCTTCGTCTGGGAGTTCAACTTCCGAGACTTCGACGTCTCGCGTGACGCCCATGCTCACGATTCCGTCGAGTTGCTACGGCGTCAAGGCATCGATTTTGAGAAGAATCGGGAGTTTGGAATCGATTCGGTACGGTTCGCCGAACTTATGATGTCCTCTGGTCTGGTCTGCGATGACCCAGTTAGCTGGGTGACGTTTCACAGTGCCTATGATTTCGGGTACCTCGTGAAATTGTTGACCCAGCGCGCTCTGCCGGAGGAATTGGCAGAATTTCTCCGTCTGGTGAGGGTGTTTTTCGGTGACAGAGTCTTTGATGTGAAGCACTTGATGAAGTTCTGCTCAAATCTTCATGGAGGTTTGGACCGAGTATGCCAATCGCTGAATGTGGAAAGAGTTGTGGGGAAAAGCCACCAGGCCGGTTCCGATAGCTTGCTCACTCTGCACGCTTTTCAGAATATAAGAGAGGTTTATTTTGGCAAGGCTGATGGTCTTGTTCAGTATGCTGGTGTCTTGTATGGTTTGGAAGTTTTCTAA 825 0.5248 MALSRGSILTRSVWSSNLESEFELIRSVIDSFPLISMDTEFPGVVVRPDTGDPSFRHREPAAHYAVLKANVDRLHLIQIGLTLSDQLGNLPTLGTSNGFVWEFNFRDFDVSRDAHAHDSVELLRRQGIDFEKNREFGIDSVRFAELMMSSGLVCDDPVSWVTFHSAYDFGYLVKLLTQRALPEELAEFLRLVRVFFGDRVFDVKHLMKFCSNLHGGLDRVCQSLNVERVVGKSHQAGSDSLLTLHAFQNIREVYFGKADGLVQYAGVLYGLEVF 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02302 274 Pfam CAF1 family ribonuclease 13 138 IPR006941 -
Vimu6g02302 274 SUPERFAMILY Ribonuclease H-like 11 271 IPR012337 -
Vimu6g02302 274 Gene3D - 2 273 IPR036397 GO:0003676
Vimu6g02302 274 FunFam Putative CCR4-associated factor 1 7 1 274 - -
Vimu6g02302 274 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 10 272 IPR039637 GO:0004535|GO:0030014
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02302 Vimu-Chr6 20118169 20124640 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02302 K12581 - gmx:100790027 500.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02302 6 20118169 20124640 Vimu6g02302 6 20118169 20124640 ECH