Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02235 ATGACCCGTTTTTCCGAGAGGCTCCGTTTGCGCTGGTTGTTTCCGAAACCGACCCGTTTTCTCGCTCTTGTTTCTCTCTCCACTCTCCATCATCTCTGCAAGTCCCTCGTTGGCTTCCTACTCTCCCAAACCCTACCCTTCCTCGCTATGGATAACTTCTTCTCCGACTACCTCCCCGACGACTTCGATTCCTCCCCCTACCGTCCCCACCGCCGCTTCCTCCTAGACCACGACCTTGATTTAGCCCGCGAGAGGGTCTACCTCCTCCCCTACAGGTGGCTGTTGGAATTGGAAGGTGAAGCTGATCGAAGAGAGGGTGTGCTTTATACGGTGACGTGTAATTCCGATTCCGACTCCGAGATTTCGCTTCATCTGAGGAAGGAGGAGGAGCGCCACAAGATTGGGGTTTCTGGTCGTCAGTATGCGTTGGTTCCCGAGGGAGTTTGGTTGCGAACACTCAAACGGTATAACGATTCTAATAATGAAGTGAAAGATTTAGGAAGCCTCTCAAATGCAGAGGATTGTTTGCCTGAATTGTTCCCCTTGCAAGTTAAGATATTTTTTTCACTGGAAACCAGTTCACTGGAAGCAAAAATAAGCCAAAAGGTTGAAGAAAATGTTGCTGACTTCTATGAGAAAGCATGTGACATTTTCAATTCTGCATATAACCCCGTGCATATTTGGGACTTCTCAGGGCAGACGACACAGTTTTTCTTGAATGGCAAATCAGGATTGCCACATGATTCTTCTGGTCAATCTGTAAAAGAGGTTACTTTGGAGTTACAAGTACACGGGCTTCCAGATTCTATGAGGGGTAATGGGGGCAATGAGATGATTTTAGATAGGTCTCAGATGGAATGTTCACACAGTGGTTCTGTTACAATGAATGGAAGCACTGACAATGTACCCCCCTGCATAACAGCCAACTATTTTCGAGGTAGTAGTTGTAGAGCAATTCAATCTTTGGGCTTGACAGGATTACAGAATCTTGGAAACACATGTTTTATGAATAGTGCCATTCAGTGTTTGGCTCACACCCCAAAGCTTGTTGATTTTTTCCTTGGAGATTACCATAAAGAGATTAATTATGAAAATCCATTGGGGATGAATGGAGAACTAGCCCTAGCTTTTGGAGACTTGCTTAGAAAGCTGTGGGTTCCCAGAGCTATGCCCATTGCACCGAGAATGTTCAAGATGAAACTGGCTAATTTTGCTCCTCAGTTTAGTGGTTATAGCCAGCATGACTCTCAAGAGCTTCTTGCTTTTTTGTTGGATGGGTTGCATGAAGACCTTAATCGAGTGAAACGCAAGCCATATCATGAAGTTAAGGATGCAGATGGTCGTCCAGATGAAGAAGTGGCAGAAGAGTATTGGCGAAATCACCTTGCTCGCAATGACTCCATAGTAGTTGATTTGTGCCAAGGCCAGTTTCGGTCAACTCTAGTTTGCCCTATTTGCAAGAAGGTTTCTATCACATTTGACCCTTTTATGTATCTATCTCTGCCTTTACCTTCTACAACGATACGGACCATGACTTTGACGGTCATAAGCACTGACGGGATTACATTGCCTTCTACACTTACGGTAACAGTACCTAAATGTGGAACACTGAAGGATCTTATTGGGGCTTTAAGTACTTCTTGTTCTCTGAGAGAAGATGAAACCCTCTTGGTGGCTGAGATATACAAGAATAAAATTTTTCGAGTATTCGAGAATCCTTCTGAATCATTAGGTGAAATTAGAGATCAAGATAAAATTGTTGCTTATCGAATGCAGAAGGATACTGAAACTACTCCCTTGGTTGCTTTTGTCCATGAACGTTCTGTGGAAATTTTTGGGAAGGAAAGGTTGTTTGGTATTCCCCTCGTAACAAGGTTGTCCAATATTTCTTGTGGATATGATGTTCAAAGGGAGTTTCTGAAGATAATCAATCCATTTATGATGCGCGCTAAAGATGTATCGGATGATTGTGAAAATAATGAAGGTATTAATAAAAGACCAAGTGAAGATGATGAATTGGGGGATACTACTAATTCCTGCGCAATAGGAAATGATACAGACTCAATCATTGGAACAGATGATGGCATACATTTGTCGACTGACTTTGAATTCTACTTACATGGAATGGAGAATGGTAAGATAATATTGGACGAACCATTAACAGTGACAACATTTCCCGGAAAGGAGCCTCCGGTAGTTGTCGTACTATGGTCGGATAAGATGCTTAAAATGTATAATACATCTCTGCTTGACTCATTGCCCGAGGTTTTCAAGTCCCAGCTATTCACCAAGAGAATACAAGAATCAGTTTCTATTTACAAGTGTCTTGAAGCCTTCTTGAAAGAAGAACCTCTTGGGCCAGAAGACATGTGGTACTGTCCTAACTGCAAAAAACCTCAGCAAGCAACTAAAAAACTAGATCTTTGGAGATTGCCCGAGATCCTTGTTGTTCATTTGAAGAGGTTCTCGTACAGCCGATACTTGAAGAACAAGCTGGAAACATTTGTTGATTTTCCAATTAATAATCTGGACTTATCAACATATGTAGCATATGGGAATAGTCAGTCTACCAATCGCTATGTGTTATACGCTATTAGTTGTCATTATGGAGGGTTAGGAGGAGGTCACTATACAGCATTTGTCCGATATGGCAATGATAAATGGTATGATTTTGATGACAGCAGAGTCGAACCTGTTAATGAGGACACGATAAAGACTCCTGCTGCTTATGTTCTTTTCTACAGGAAAGTTTAG 2754 0.423 MTRFSERLRLRWLFPKPTRFLALVSLSTLHHLCKSLVGFLLSQTLPFLAMDNFFSDYLPDDFDSSPYRPHRRFLLDHDLDLARERVYLLPYRWLLELEGEADRREGVLYTVTCNSDSDSEISLHLRKEEERHKIGVSGRQYALVPEGVWLRTLKRYNDSNNEVKDLGSLSNAEDCLPELFPLQVKIFFSLETSSLEAKISQKVEENVADFYEKACDIFNSAYNPVHIWDFSGQTTQFFLNGKSGLPHDSSGQSVKEVTLELQVHGLPDSMRGNGGNEMILDRSQMECSHSGSVTMNGSTDNVPPCITANYFRGSSCRAIQSLGLTGLQNLGNTCFMNSAIQCLAHTPKLVDFFLGDYHKEINYENPLGMNGELALAFGDLLRKLWVPRAMPIAPRMFKMKLANFAPQFSGYSQHDSQELLAFLLDGLHEDLNRVKRKPYHEVKDADGRPDEEVAEEYWRNHLARNDSIVVDLCQGQFRSTLVCPICKKVSITFDPFMYLSLPLPSTTIRTMTLTVISTDGITLPSTLTVTVPKCGTLKDLIGALSTSCSLREDETLLVAEIYKNKIFRVFENPSESLGEIRDQDKIVAYRMQKDTETTPLVAFVHERSVEIFGKERLFGIPLVTRLSNISCGYDVQREFLKIINPFMMRAKDVSDDCENNEGINKRPSEDDELGDTTNSCAIGNDTDSIIGTDDGIHLSTDFEFYLHGMENGKIILDEPLTVTTFPGKEPPVVVVLWSDKMLKMYNTSLLDSLPEVFKSQLFTKRIQESVSIYKCLEAFLKEEPLGPEDMWYCPNCKKPQQATKKLDLWRLPEILVVHLKRFSYSRYLKNKLETFVDFPINNLDLSTYVAYGNSQSTNRYVLYAISCHYGGLGGGHYTAFVRYGNDKWYDFDDSRVEPVNEDTIKTPAAYVLFYRKV 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02235 917 Gene3D Cysteine proteinases 313 553 - -
Vimu6g02235 917 MobiDBLite consensus disorder prediction 658 673 - -
Vimu6g02235 917 SUPERFAMILY Cysteine proteinases 323 916 IPR038765 -
Vimu6g02235 917 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 326 341 IPR018200 GO:0004843|GO:0006511
Vimu6g02235 917 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 860 877 IPR018200 GO:0004843|GO:0006511
Vimu6g02235 917 Gene3D Cysteine proteinases 616 917 - -
Vimu6g02235 917 MobiDBLite consensus disorder prediction 658 677 - -
Vimu6g02235 917 Pfam Ubiquitin carboxyl-terminal hydrolase 325 914 IPR001394 GO:0004843|GO:0016579
Vimu6g02235 917 CDD Peptidase_C19R 764 915 - -
Vimu6g02235 917 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 325 917 IPR028889 -
Vimu6g02235 917 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 262 916 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02235 Vimu-Chr6 19549860 19557275 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02235 771 917 Miscellaneous Gene Families AT4G31670 34.667 1.88e-18 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02235 - K21343 gmx:100791802 1484.54