Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02228 ATGGATTCTTCTTCCATCTATGGCGTCTCCCATTTACTCACCTTCTTCCTTCTCTTCCTTTTACAGATATCTTCACTCTCCGCATTTCCTCACAACTCTTCAACCACTCCTCAGATTAACTCCAACTCCATCCTTGTCGCGCTTCTCGATTCCCATTACACCGAACTCGCCGAGCTCGTCGAGAAAGCGCTTCTTCTCCAGCAACTTGAAGACGCCGTCGGCAACCACAACATAACCATCTTCGCCCCGCGAAACAAGGCCCTCGAACGCGACCTCGACCCCGAGTTCAAGCGCTTCCTACTCGAGCCTCGCAATCTTCGCTCCCTTCAGACACTCCTCATGTCCCACATTCTCCCCACGCGAATCTCCTCTCGCCACTGGCCCAACTCCGATCGCCATCACGCCACTCTCGGAAACCACCACCACCTGCATTTAGCCACAAAGCCCTCCGGCCAGATGACCGTCGACGCCGCCGAGATCCTCAGCGCCGACGACGTTGTCCGCCCCGACGGAGTTATCCACGGCATCGAGCGTCTCATAGTCCCCCGATCCGTCCAGGAGGACTTCAACCGCCGCCGCAACCTCGCCGCCATCTCCGCCGTCCTCCCGGAGGGCGCGCCGGAGATCGATCCCCGCACCCACCGCCTCAAGAAGCCCGCCCCAGTCCCCGCCGGCGCCCCTCCCGTTCTCCCAATCTACGACGCCTTGGCACCAGGACCGTCCATCGCTCCCGCACCGGCGCCGGGACCCGGGGGCCCGAAGCACCACTTCAATGGCGAGCGGCAGGTGAATGACTTCATCCACACGCTCTTGCATTACGGAGGGTACAACGAAATGGCCGATATTCTCGTTAACCTAACGTCTCTGGCCACCGAAATGGGAAGGCTCGTTTCAGAGGGTTACGTCCTTACCGTTTTGGCCCCTAACGACGAAGCCATGGCGAAGTTGACGACGGATCAGTTGAGCGAACCTGGCGCACCGGAGCAGATTATGTACTATCACATTGTTCCCGAGTACCAAACCGAAGAGAGTATGTATAATGCCGTCAGAAGGTTCGGTAAGGTCAGCTACGATACCCTGCGCTTACCCCACAAGGTTCTCGCTCAGGAGTCTGACGGTTCCGTTAAATTCGGTCACGGCGATTCCTCCGCATACTTGTTCGATCCTGATATTTACACCGATGGAAGGATCTCCGTCCAGGGAATCGACGGCGTTCTTATGCCCCCGGAGGAAGAGGAAGAACGCACCCACCGCACCACTCCACTTGTCAAGGTTGCCGCTAAACCAAGAAGAGGGAAGGGAAGGGAAGGGAAGGAGATCGTGTTTATATTTATGGCATTGCCCTTTCTGGAAAGGGCTGGTGTTGAAGTGGAATAA 1377 0.5708 MDSSSIYGVSHLLTFFLLFLLQISSLSAFPHNSSTTPQINSNSILVALLDSHYTELAELVEKALLLQQLEDAVGNHNITIFAPRNKALERDLDPEFKRFLLEPRNLRSLQTLLMSHILPTRISSRHWPNSDRHHATLGNHHHLHLATKPSGQMTVDAAEILSADDVVRPDGVIHGIERLIVPRSVQEDFNRRRNLAAISAVLPEGAPEIDPRTHRLKKPAPVPAGAPPVLPIYDALAPGPSIAPAPAPGPGGPKHHFNGERQVNDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHIVPEYQTEESMYNAVRRFGKVSYDTLRLPHKVLAQESDGSVKFGHGDSSAYLFDPDIYTDGRISVQGIDGVLMPPEEEEERTHRTTPLVKVAAKPRRGKGREGKEIVFIFMALPFLERAGVEVE 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02228 458 Gene3D FAS1 domain 282 409 IPR036378 -
Vimu6g02228 458 SUPERFAMILY FAS1 domain 242 410 IPR036378 -
Vimu6g02228 458 SUPERFAMILY FAS1 domain 31 183 IPR036378 -
Vimu6g02228 458 ProSiteProfiles FAS1/BIgH3 domain profile. 40 180 IPR000782 -
Vimu6g02228 458 ProSiteProfiles FAS1/BIgH3 domain profile. 263 406 IPR000782 -
Vimu6g02228 458 FunFam Fasciclin-like arabinogalactan protein 16 258 409 - -
Vimu6g02228 458 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 3 436 IPR044654 -
Vimu6g02228 458 SMART fasc_3 304 409 IPR000782 -
Vimu6g02228 458 SMART fasc_3 79 183 IPR000782 -
Vimu6g02228 458 Gene3D FAS1 domain 44 182 IPR036378 -
Vimu6g02228 458 Pfam Fasciclin domain 298 408 IPR000782 -
Vimu6g02228 458 Pfam Fasciclin domain 52 182 IPR000782 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02228 Vimu-Chr6 19510912 19512502 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02228 - - gmx:100818575 708.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02228 6 19510912 19512502 Vimu6g02228 6 19510912 19512502 ECH