Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02215 ATGAAATTCGGGTGTGCATTCAGAGAGTACCTGCAGGAGGAGCGGGAGTGGTTCTTGGGTGAGAAATGTGCTCACGTTGAATACAGCAGGTTGAAGAAAGTGTTGAAGACTTGCAAGAAAGACGCCTCTTCAGACAAGGACCTCTTGTGTCAGTGTCAGTCTTGCCCATTATGTGACCAACAGTTCTTCTCTGAGTTGATGAAGGAAGCATCAGATGTGGTGGGGTACTTTAGTTCAAGAGTTCAGCATCTCCTTCATCTTCACATTTCTACAGGAATACACAGATATGTGTTGCGTTTGCGCCAGTGCTTTAAAAGTGATAGGCAAACCCTTACTCAAGAAGGAAGGATTCTAATCGAGTACATTGGGATGAATGCTATTGCAATGAGGAAAATACTTAAGAAATATGATAAAGTACACAGCTCTGTTAATGGGGAGAACTTCAAATCTAGGATGCACGCTCAACACATTGAACTTTTGCATTCTCCTTGGATAATTGAATTGGGTGCTTTTTATCTGAATTCTACTGGACTTGATAGTTGTGAGCTTGATGGAGTCTATGGTCACTTTTCTTGTGATCTAAACATAAATAAAGATGTAATGACATTGGTTCTTCCCGATTCTATTAAGCTCGAGTATGCTCTAACTTGTGCAATTTGTCTGGATATTGTTTTCAACCCTTATGCTTTGAGTTGTGGTCATATCTTCTGTAAGTCATGTGCTTGCTCAGCTGCCTCTGTGATGATTTTTCAAGGCCTTAAAGCTGCCAGTCCAGAGTCGAAGTGTCCTATATGCAGAGAGGTTGGCGTTTATTCTAAGGCTGTGCATATGGTAGAACTTGATCTACTTATGAAAAGAAGGTGCAAAGATTACTGGAGAGAGAGGCTAGCTAGTGAACGAGTTGAGACATTGAAGCAATCCAAGGAATACTGGAATTTACAGTCCACATATGCAATTGGATTGCGCTAG 969 0.4128 MKFGCAFREYLQEEREWFLGEKCAHVEYSRLKKVLKTCKKDASSDKDLLCQCQSCPLCDQQFFSELMKEASDVVGYFSSRVQHLLHLHISTGIHRYVLRLRQCFKSDRQTLTQEGRILIEYIGMNAIAMRKILKKYDKVHSSVNGENFKSRMHAQHIELLHSPWIIELGAFYLNSTGLDSCELDGVYGHFSCDLNINKDVMTLVLPDSIKLEYALTCAICLDIVFNPYALSCGHIFCKSCACSAASVMIFQGLKAASPESKCPICREVGVYSKAVHMVELDLLMKRRCKDYWRERLASERVETLKQSKEYWNLQSTYAIGLR 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02215 322 Pfam RING-type zinc-finger 217 263 IPR027370 -
Vimu6g02215 322 SUPERFAMILY RING/U-box 209 268 - -
Vimu6g02215 322 ProSitePatterns Zinc finger RING-type signature. 232 241 IPR017907 -
Vimu6g02215 322 CDD RING-HC_BAH1-like 207 280 - -
Vimu6g02215 322 SMART ring_2 217 265 IPR001841 -
Vimu6g02215 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 317 IPR013083 -
Vimu6g02215 322 CDD SPX_BAH1-like 2 145 - -
Vimu6g02215 322 ProSiteProfiles Zinc finger RING-type profile. 217 266 IPR001841 -
Vimu6g02215 322 ProSiteProfiles SPX domain profile. 1 150 IPR004331 -
Vimu6g02215 322 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 320 IPR033326 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02215 Vimu-Chr6 19421685 19424123 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02215 K16275 - gmx:100781704 582.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02215 6 19421685 19424123 Vimu6g02215 6 19421685 19424123 ECH