Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02212 ATGGAACGTCAGGGTCATGATTATACAGCTGCATCTGCTATGGCATATGCTCAGCAACAGAGGCAAGCTGCTAATATGCAGCAGCAGCAACAACAACAGCAACAGTTTGGGTTTCATCCCCAGCATCAGCAGTTTCCTTCATCAATGCATGGTCCTCCTTTTATACCCCCAGGTCCAGGTCCTGCACACCCCCCTATGCAACAATTTCCGTATCATCATGCCTTGCAGCAGCAGCAGCAGCCACTTCCACAATTACACCCTCATGCCCCTCCTCCGCCCCATCTCCTTCTTCAGCAGCAGCACCAAGGACCGCCTGCATTCCCTTCACATTATCCTCCTTCTCTTGTTCCATCTCCTTTTTATGATTCTGCCCCACTCCCTGTCGCTCCCCCCTCTGATCCGGATCTCCACAAGCGAATTGACAAGCTTGTTGAGTATGCAGTGAAAAATGGCCCCGACTTTGAAGCTATGATATGTGAAAAGCAACGTGATAATCCTTCATATAGTTTCCTCTTTGGCGGGGAAGGCCACGGTTACTACCGTTATAAACTTTGGTTGTCAACTCGTCCACCGGGTGGTCCATTCAACCCGCCTTTCCCATCATCTTCCATGCCCATGATCCATCCCCCTCCAAATCCGATGATGAATCCGTCTCCTCTAAATGCTTCTCCAATGAATCCTGCAGGAATTGGGTCTTCACCTTCAATGCTAGGCCCACCTCCTTTCCAACAGTTCTATGATCAACAACACCACCATCAGCATCCTCAATCTTTTGGGCTTCCTGGGCGGCCTGAGTATGATCAGTCATCCAATTCTTTCAAAGGACCCTCTGGGCCACTTCCATCTGATATCGCAATGGAGCTCAGTAACGTTCTTAACAATTTAAATGGTACAAAAGAATCCATCAAAGGTGCAAAACTTTGGTTCATGCAGAGATCTCCATTTGCACCAGCCCTAGCAGAGGCTCTTAGAGACAGGGTCTTTGCATTGGATGAAGTCGAGAGACAGTTGCACATAATATACCTTGCCAATGACATCCTTTTTGACAGCTTAAATAGGAGGACAAACGGCAATGACCTTGACAGTGAAGCTCTTGCCTTGAAACCAGTTTTAGGCTCCATGCTTGCAAGAATTTATCATAACCCACAAAGCAATGAGGAATACAGGAAAAGATTGCAGCAAATGGTGGAGTTCTGGGCCTCTAAAACGGTATACGATCAGGATACTATATCTTCACTTAAGGGTGAGATGATTGGTGGGCTGCAAACAAATCCTTTTCCTGGGGCTTCAAAGGATTTATCTTCTGCTTCAGCAGAATCAGTTGCAGGAGTTTTGCAGACACCTAACCATGCCCAGCAGTGGCAAGCTGATAGGTTAGGCTCTGGTTCAAATGTCTTAGATCAAGATCGTACTGATAAGCATGCAGCTCCAGCACAGTCACTATCTGTACCCCTAGCAGCTCAGCAGTTTCTTCCAAATCCTGCTCCTCCTAGTGCCTTTCCTGGGTCCATGGCTATTCCATCTTCTGTTCAACCTGCTAACCAAGCACCTGGTGGTGTTCATTTATTGCCCCCTCCATCATCCAGCACCGGTGAACAATTGCCACCATATCCATTATTCCCACCTGGCCTCATTCCTGGAATGGTTAGAAAGATGCAGATCGGTAGTGGGGTTCCATATTCTCCTTTGAGTCCTTTGGATATCCCAACCATCATACCGCCGTCAACTGTGCCACCATCTGAAATTCTTCAAAGAGTGTCAAAATTCTTTAAGGAAATTGGAGAGGTAAATCCTTCTGAGGGTCCTATGAATTCTGATTCAAGAGATGAAGATGATGAATATGATAGAGAATTTGAGAGGGAGCCAGCAGTACGAAAGGGAGGTGCTTGTATACCTCCACCTCCAAACTTGCAGGTTGATCCAGAGACAGGGACCTATGCTGATGGGACAGTAGAACGGAAACCTGGATCCAGTGGCTCGGGCAGGTTAGGGCTGGGGGCCACTGCTAATCCCAACGAGGTGAGTCAGTATGATGATGTATATACATCTTACAGGAAGCAGAGAAGCACCAATTACCATTCATCAATGAGTGCTAGAGCTGCAGCAAGATGA 2112 0.4725 MERQGHDYTAASAMAYAQQQRQAANMQQQQQQQQQFGFHPQHQQFPSSMHGPPFIPPGPGPAHPPMQQFPYHHALQQQQQPLPQLHPHAPPPPHLLLQQQHQGPPAFPSHYPPSLVPSPFYDSAPLPVAPPSDPDLHKRIDKLVEYAVKNGPDFEAMICEKQRDNPSYSFLFGGEGHGYYRYKLWLSTRPPGGPFNPPFPSSSMPMIHPPPNPMMNPSPLNASPMNPAGIGSSPSMLGPPPFQQFYDQQHHHQHPQSFGLPGRPEYDQSSNSFKGPSGPLPSDIAMELSNVLNNLNGTKESIKGAKLWFMQRSPFAPALAEALRDRVFALDEVERQLHIIYLANDILFDSLNRRTNGNDLDSEALALKPVLGSMLARIYHNPQSNEEYRKRLQQMVEFWASKTVYDQDTISSLKGEMIGGLQTNPFPGASKDLSSASAESVAGVLQTPNHAQQWQADRLGSGSNVLDQDRTDKHAAPAQSLSVPLAAQQFLPNPAPPSAFPGSMAIPSSVQPANQAPGGVHLLPPPSSSTGEQLPPYPLFPPGLIPGMVRKMQIGSGVPYSPLSPLDIPTIIPPSTVPPSEILQRVSKFFKEIGEVNPSEGPMNSDSRDEDDEYDREFEREPAVRKGGACIPPPPNLQVDPETGTYADGTVERKPGSSGSGRLGLGATANPNEVSQYDDVYTSYRKQRSTNYHSSMSARAAAR 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02212 703 SMART 558neu5 287 418 IPR006569 -
Vimu6g02212 703 SMART surpneu2 137 189 IPR000061 GO:0003723|GO:0006396
Vimu6g02212 703 MobiDBLite consensus disorder prediction 246 280 - -
Vimu6g02212 703 MobiDBLite consensus disorder prediction 50 66 - -
Vimu6g02212 703 MobiDBLite consensus disorder prediction 594 703 - -
Vimu6g02212 703 MobiDBLite consensus disorder prediction 1 108 - -
Vimu6g02212 703 ProSiteProfiles SURP motif repeat profile. 139 183 IPR000061 GO:0003723|GO:0006396
Vimu6g02212 703 PANTHER SR-RELATED CTD ASSOCIATED FACTOR 6 126 702 IPR039037 GO:0006874
Vimu6g02212 703 SUPERFAMILY Surp module (SWAP domain) 111 186 IPR035967 GO:0003723|GO:0006396
Vimu6g02212 703 Gene3D - 285 420 IPR008942 -
Vimu6g02212 703 MobiDBLite consensus disorder prediction 663 697 - -
Vimu6g02212 703 MobiDBLite consensus disorder prediction 13 48 - -
Vimu6g02212 703 ProSiteProfiles CID domain profile. 280 421 IPR006569 -
Vimu6g02212 703 Pfam CID domain 287 413 IPR006569 -
Vimu6g02212 703 Gene3D Surp module 124 189 IPR035967 GO:0003723|GO:0006396
Vimu6g02212 703 Pfam Surp module 140 185 IPR000061 GO:0003723|GO:0006396
Vimu6g02212 703 MobiDBLite consensus disorder prediction 263 277 - -
Vimu6g02212 703 MobiDBLite consensus disorder prediction 84 98 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02212 - - gmx:100816468 1043.49