Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02207 ATGCGAAGAGCCCGAAATATGAGATCAAACATAGTTTCTGAGGCAGGGTTGCCTACTAGGATGAATCAATGGTGGGAAAGCATTCCATTTCTCACTTCTGCAGTGGTGGTTGTCTGTGGAGTCATTTACTTGGTCTGTCTTTTGGTTGGATACGATTCCTTTGCTGAGGTTTGCTTCTTGCCATCTGATGTTGTGTCACGGTTTCAAGTTTACAGGATTTATACTTCCATTATCTTCCATGGTTCACTGCTTCATGTTCTCTTCAACATGATGGCTTTAGTTCCCTTGGGGTCTGAGCTGGAGAGGATCATGGGTTCAGTTCGCTTGCTATATGTCATTATTTTGTTGGCTACAAGCAATGCCATATTCCACGTGCTCATAGCACTGCTGGTGGCACACAATCCTGTTCTTACATATGATTACCTCATGAATGAGTGTGCCATAGGCTTCTCAGGAGTTCTATTTTCAATGATTGTTATAGAGACAAGCTTGAGTGGAGTTCAATCCAGGAGTGTTTTTGGATTGTTTAATGTGCCTGCCAAGTGGTATGCATTCTTTTTGTTGGTAGTATTCCAGCTTCTCATGCAAAATGTTTCACTACTTGGGCACCTTTGTGGCATTTTATCTGGGTTTGCATATACATATGGATTGTTTAATTTCCTCATACCTGGAACCACATTTTATTCTTCTATTGAATCCTCGTCCTGGCTTTCAACATGTGTGAGACGTCCAAAATTTATTGTTTGCACGGGTGGAAATCCTTCGGGTTATATTCCTACACATACAAACCAAAATTCAACAAGTGGTGGCTTGCTTTCTGGGAATATTTGGAGGAACCTGTCTTCATTGATGCCTCAAAGGGAAGTGTCTACTCAGTCAACTGAGGACAGTAGGTTCCCTGGGAGGGGAAGGACCCTTGGTTCTAGTCAAGATCAAGCTCCTTCTCATCTTCATTCAGATTCAAATCTTCAAGAAAGACTTTTGGAGGATAGTAGTCCCAATAATCCTTTAGTTTCATCCACTCCTAGTAACACTCATCAGTTACCAGAAGGAAGGCACTCAGCTGTTAATGTAGCTACAACGACTGCTGTTCCACAGCATCAGGGTGCAGTCGTTTCGGAAGAAGGGATTAAAAAACTCGTATCAATGGGCTTTGACAGGACACAAGTGGAAGTGGCGCTTGCAGCTGCTGATGGTAATATCAATGTTGCAGTGGAAATACTCATGAGCCAGCAGAGTTGA 1242 0.4267 MRRARNMRSNIVSEAGLPTRMNQWWESIPFLTSAVVVVCGVIYLVCLLVGYDSFAEVCFLPSDVVSRFQVYRIYTSIIFHGSLLHVLFNMMALVPLGSELERIMGSVRLLYVIILLATSNAIFHVLIALLVAHNPVLTYDYLMNECAIGFSGVLFSMIVIETSLSGVQSRSVFGLFNVPAKWYAFFLLVVFQLLMQNVSLLGHLCGILSGFAYTYGLFNFLIPGTTFYSSIESSSWLSTCVRRPKFIVCTGGNPSGYIPTHTNQNSTSGGLLSGNIWRNLSSLMPQREVSTQSTEDSRFPGRGRTLGSSQDQAPSHLHSDSNLQERLLEDSSPNNPLVSSTPSNTHQLPEGRHSAVNVATTTAVPQHQGAVVSEEGIKKLVSMGFDRTQVEVALAAADGNINVAVEILMSQQS 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02207 413 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 371 411 IPR015940 -
Vimu6g02207 413 SMART uba_6 373 410 IPR015940 -
Vimu6g02207 413 Gene3D - 348 413 - -
Vimu6g02207 413 Pfam Rhomboid family 66 219 IPR022764 GO:0004252|GO:0016020
Vimu6g02207 413 SUPERFAMILY UBA-like 366 412 IPR009060 GO:0005515
Vimu6g02207 413 FunFam Rhomboid-like protein 15 22 219 - -
Vimu6g02207 413 PANTHER DER1-LIKE PROTEIN, DERLIN 21 308 - -
Vimu6g02207 413 SUPERFAMILY Rhomboid-like 26 220 IPR035952 -
Vimu6g02207 413 Gene3D - 22 219 IPR035952 -
Vimu6g02207 413 CDD UBA_At3g58460_like 374 409 - -
Vimu6g02207 413 FunFam UV excision repair protein RAD23 homolog 371 412 - -
Vimu6g02207 413 Pfam UBA/TS-N domain 374 408 IPR015940 -
Vimu6g02207 413 MobiDBLite consensus disorder prediction 285 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02207 Vimu-Chr6 19367713 19376069 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02207 - - gmx:100805745 725.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02207 6 19367713 19376069 Vimu6g02207 6 19367713 19376069 ECH