Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02202 ATGATATTAGTTGGACTTGAACCAGCCCTGAATCAAAGAGGCATTGGAGCAAAACTACCTGTAAAACATGCCAATCTGCTGCCAGAAAATTTTGGTGGTGACTGGAATGGTTGTTTTATTGCTTCTAGTGCATACGAAGATCGGCTGGTTATGTTTTCTATGTCGATGTCCAGTGGTGATATCATCGATGAGAGAATTTTATATCCTTCGGAGAGTGAAGGAACTGCAAGTTCTTCCAGAAGCACCCAAAGAACCAGTATGCGTGGTACCATTTGGAGCATCTGCTTCATTTCACAAGATTCCAGACAACCAAGCAAGGAGCATAATCCTGTACTTGCAGTTATTATAAATAGGAGGGGATCCCTTCAAAATGAATTGCTATTATTGGAATGGAATGTTAAAGCACACAAAATATTTGTTATTTCTCAGTATGCTGAAGCTGGGCCTCTGGCATATGACATTGCTGAAGTTCCTAACTCTGGGGGACTTGCATTCCTGTTCAGGACTGGTGATGTTCTCTTAATGGATCTTAGAGATCCCCGCAATCCATTCTGTGTCTATAAGACTAACTTGAACATTTTGCCAAATGCCATGGAAGAGCAGACTTATGTGGATGACTCTTGTAAATTACACGATGTTGACGATGAACGCTTTAATGTTGCTGCCTGTGCTTTGTTGGAACTGAGTGATTATGATCCTATGTGCATAGACAGTGACAATGGTGGTGCTAATTCAGGCTACAAATACATATGCTCGTGGAGTTGGGCACCTGAAAATAATAGAGATCCTAGGATGATCTTCTGTGTAGATACTGGGGAATTTTTTATGATTGAAGTTCTTTTTGATTCTGAAGGCCCTAAAGTTAACCTGTCTGAGTGTCTCTATAAAGGTCTGCCGTGTAAAGCACTTTTGTGGGTTGAAGGTGGATATGTAGCTGCCCTTGTGGAAATGGGGGATGGTGTGGTCCTGAAATTGGAAGATGGAAGGCTATGCTATACAAACCCTATTCAAAACATTGCACCAATCTTGGATATGGCAGTTGTAGATTATCGTGATGAGAAGCATGATCAAATGTTTGCTTGCTGTGGTGTGGCTCCAGAGGGGTCATTAAGGATAATTCGAAATGGTATTAATGTGGAAAATCTACACAGGACTGCTTCTATATATCAAGGGGTAACTGGTACTTGGACTGTCAGAATGAAAATTACTGATTCACATCATTCTTTTCTAGTTCTATCGTTTGTTGAGGAAACCAGAATATTGTCAGTTGGGTTAAGTTTTACTGATGTGACTGATTCAGTTGGTTTCGAACCTAATGTCTGTACTCTGGCATGTGGCCTTGTGACTGATGGTGTACTTGTTCAGATCCACCGCTGTACTGTTAAGCTTTGTTTGCCCACTAAAGCTGCTCATTCTGAAGGTATCCCTTTGCCCTCTCCTATTTCCACATCTTGGTCTCCAGACAACGTGAGTATCAGTTTGGGGGCAGTTGGGCATAATTTCATAGTTGTGTCAACCTCTAACCCATGCTTTTTGTTTATCCTTGGGGTTAGATTGCTATCAGCTTATCAATATGAAATTTATGAAATGCAACATTTGGTACTGCAGAATGAATTATCATGCATTTCCATCCCTGGACAAGAAATTGAGCGAAAACCATCAAATTCATCCATTTCAGCAAATAATAGTAACATCTCTTCTTTCCAAAGTGGAGTGGACATCAGTAAAACCTTTGTTATTGGTACACACAGGCCCTCTGTGGAAATTTGGTTTTTTGCACCAGGTGGAGGAATTACAGTAGTGGCTTGTGGGACAATTTCATTGACTAATACAATAGGGACTACCATCAGTGGTTGTGTACCTCAAGATGTACGACTTGTATTTGTTGATAAGTATTATGTTCTTGCTGGATTGAGGAATGGAATGCTCCTCCGCTTTGAGTGGCCAGTGGAACCATGTCCATCATCACCAATAAATATGGTGGATACTGCTTTATCTTCTATAAATTTGGTAAATTCTGCAAGTAATGTTTTAGGCAAGAGAAACGACCCTCCTTCAACACTTCAACTGATTGCCATTCGACGCATTGGCATTACTCCAGTTTTCTTGGTGCCACTAGGTGACACACTGGATGCTGATATAATTGCTCTTAGTGATAGGCCTTGGTTGTTGCATAGTGCAAGACATAGCCTTTCATATACTTCTATCTCATTTCAACCTTCCACACATGTGACTCCTGTTTGCTCTGTTGAGTGTCCAAAAGGAATATTGTTTGTTGCAGAAAACTGTTTACATCTGGTGGAGATGGTTCACAGCAAGAGACTTAATATGCAGAAGTTTCATTTAGAGGGCACTCCTAGGAAGGTCCTGTATCACGATGAAAGCAAAATGTTGCTAGTGATGAGGACTGAACTGAATTGTGGTACATGTCTGTCGGACATATGTTGTGTGGATCCCCTAAGCGGGTCAGTAGTGTCGACTTTTAGACTTGAACATGGTGAAACAGGAAAATCCATGGAATTAATAAGAGTTGGAAGTGAGCAAGTGCTTGTTGTTGGAACTAGTCTGTCTTCTGGTCCAGCAATAATGCCCAGTGGTGAAGCTGAAAGTTGCAAGGGTCGTCTTCTTGTTCTTTGTCTTGTTCATGTGCAAAATTCAGATAGTGGTTCGATGACATTCTGTTCAAAGGGAGGGTCATCATCTCAAAAAACTTCGCCATTCCATGAAATTGTTTCATATGCTCCTGAACAGTTATCGAGCAGCAGCCTTGGCAGCAGTCCTGATGATAATAGTTCTGATGGCATCAAACTCGATGAAAACGAAGTATGGCAGTTCCGATTGGCTTATGCAACAAAATGGCAGGGGATGGTTTTTAAAATCTGTCCTTATCTTGATCGTTACTTCTTGGCATCTGCTGGCAATGCTATCAGAAGGTTTTGTATCTGTTATCTTCATTTGCTTTATACAGTCTTCTCATCAGGTTACTTTCTTGCTATTCAGTTCTATGTTTGTGGTTTCCCTAATGACAATCCTCAAAGAGTGAGAAGGTATGCTATGGGAAGGACGCACCACATGATAACATCTTTGAGTGCACATTTTACAAGAATTGCAGTTGGTGATTGTCGTGATGGAATCATATTATTTTCTTATCATGAGGAAGCTAGAAAATTGGAGCAACTTTGCTGTGATCCATCACGAAGGTTAGTTGCTGATTGCATTTTGATGGATGCTGATACAGCTGTTGTTTCGGATCGAAAAGGAGGAATTGCTATTTTATGTTCAAATCATTTGGAAGATAATGCGAGTACTGAATGCAACATGACACTAAGCTGTGCTTATTTCATGGCTGAGATTGCCTTGAGCGTCCAGAAGGGCTCATATTCATACAGACTTCCAGCTGATGATGTTTTGCAAGGCGGCAATGGCCCCAAGACAAATGTTGATTCACTACAAAATACTATTATTGCCAGTACCCTGTTAGGAAGCATAATGATCTTCATCCCTTTATCAAGACTTTTTCGCCACCTTCTAAATACTTCGAGGAGCAGGGATATAGACCCTGAATGGCACGACTTGCATGTAATGGAAGAATATGAGTTATTAGAAGCTGTGCAAGAAAGACTTGTTGTCCACCAGTTGACCGCACCTGTTCTAGGAAATGATCATAACGAGTTTCGCAGTCGTGAAATTCGGGATGGAGTACCCAAGATACTTGATGGTGACGTGTTAACCCAGTTTCTAGAGCTGACAAGTATGCAGCAAAAGATGATTTTATCTTCCGAGCCACCTGATATAGCAAAACCAAGTTTGAAGCCACTCCTACCCCCCAATGTTTCTGTAAATCAGGTGGTTCAACTTCTTGAACGAGTCCATTATGCTCTGAACTGA 3888 0.4108 MILVGLEPALNQRGIGAKLPVKHANLLPENFGGDWNGCFIASSAYEDRLVMFSMSMSSGDIIDERILYPSESEGTASSSRSTQRTSMRGTIWSICFISQDSRQPSKEHNPVLAVIINRRGSLQNELLLLEWNVKAHKIFVISQYAEAGPLAYDIAEVPNSGGLAFLFRTGDVLLMDLRDPRNPFCVYKTNLNILPNAMEEQTYVDDSCKLHDVDDERFNVAACALLELSDYDPMCIDSDNGGANSGYKYICSWSWAPENNRDPRMIFCVDTGEFFMIEVLFDSEGPKVNLSECLYKGLPCKALLWVEGGYVAALVEMGDGVVLKLEDGRLCYTNPIQNIAPILDMAVVDYRDEKHDQMFACCGVAPEGSLRIIRNGINVENLHRTASIYQGVTGTWTVRMKITDSHHSFLVLSFVEETRILSVGLSFTDVTDSVGFEPNVCTLACGLVTDGVLVQIHRCTVKLCLPTKAAHSEGIPLPSPISTSWSPDNVSISLGAVGHNFIVVSTSNPCFLFILGVRLLSAYQYEIYEMQHLVLQNELSCISIPGQEIERKPSNSSISANNSNISSFQSGVDISKTFVIGTHRPSVEIWFFAPGGGITVVACGTISLTNTIGTTISGCVPQDVRLVFVDKYYVLAGLRNGMLLRFEWPVEPCPSSPINMVDTALSSINLVNSASNVLGKRNDPPSTLQLIAIRRIGITPVFLVPLGDTLDADIIALSDRPWLLHSARHSLSYTSISFQPSTHVTPVCSVECPKGILFVAENCLHLVEMVHSKRLNMQKFHLEGTPRKVLYHDESKMLLVMRTELNCGTCLSDICCVDPLSGSVVSTFRLEHGETGKSMELIRVGSEQVLVVGTSLSSGPAIMPSGEAESCKGRLLVLCLVHVQNSDSGSMTFCSKGGSSSQKTSPFHEIVSYAPEQLSSSSLGSSPDDNSSDGIKLDENEVWQFRLAYATKWQGMVFKICPYLDRYFLASAGNAIRRFCICYLHLLYTVFSSGYFLAIQFYVCGFPNDNPQRVRRYAMGRTHHMITSLSAHFTRIAVGDCRDGIILFSYHEEARKLEQLCCDPSRRLVADCILMDADTAVVSDRKGGIAILCSNHLEDNASTECNMTLSCAYFMAEIALSVQKGSYSYRLPADDVLQGGNGPKTNVDSLQNTIIASTLLGSIMIFIPLSRLFRHLLNTSRSRDIDPEWHDLHVMEEYELLEAVQERLVVHQLTAPVLGNDHNEFRSREIRDGVPKILDGDVLTQFLELTSMQQKMILSSEPPDIAKPSLKPLLPPNVSVNQVVQLLERVHYALN 1295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02202 1295 Gene3D - 377 774 IPR015943 GO:0005515
Vimu6g02202 1295 PANTHER DNA REPAIR/RNA PROCESSING CPSF FAMILY 34 1260 - -
Vimu6g02202 1295 FunFam Cleavage and polyadenylation specificity factor (CPSF) A subunit protein 377 774 - -
Vimu6g02202 1295 Pfam Mono-functional DNA-alkylating methyl methanesulfonate N-term 34 544 IPR018846 -
Vimu6g02202 1295 Pfam CPSF A subunit region 1014 1171 IPR004871 GO:0003676|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02202 Vimu-Chr6 19331261 19342803 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02202 K12830 - gmx:100806799 2132.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02202 6 19331261 19342803 Vimu6g02202 6 19331261 19342803 ECH