Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02192 ATGATGCTCAGACTTCGAAGCCGCGACGGCCTGGAGCGAGTAATCGTAGAAAACCCGCACACCACCACAGTGTCGGAGCTGAAACGGATTATCGAAGCCCAATTGAGAATTCCGGTTCACAACCAAACCCTCTCCACCAACCAGAACCTTCTATTGGCGAAATCGCGTGAAGATCTCCATCGATTCACCGATATGGCCAACCCCGACCTCACTCTCTCGTCTCTCAACCTCGCCCACGGCTCAATCGTCTTTTTGACATACGAAGGCGAGCGCCACGTGGCGGGCCCCGCCTTCAACCCTGCGGGGTCCTTCGGCCGCAAGATGACCATGGACGACCTCATCGCCAAGCAGATGCGCGTCACGCGCCAGGAGAATCCGCACTGCGAGCTCGTCTCCTTCGACCGCGACTGCGCCAACGCCTTCCAGCATTACGTGAACGACACGCTGGCGTTCGCGGTCAAGCGCGGCGGCTTCATGTACGGCACTGTTTCCGAGGAGGGGAAGGTCGAGGTGGACTTCATCTACGAGCCGCCGCAGCAGGGTTCGGAAGAGAATCTCTTGTTTTTCAGAGACCCCGAAGAGGAGAAACTCGTGGAGGCTATTGCGGCGGGATTGGGGATGAGAAGGGTAGGGTTCATTTTCACGCAGACGATAAGCCAGGACAAGAAGGACTATACTTTGTCGAATAGGGAGGTGCTTCAGGCTGCGGAGTACCATGCTGAGAGTGGATTGAAAGAGTGGGTTACTGCGGTTGTTAAGCTTGAGGTGAACGATGATATGAGTGCGGATGTGCATTTTGAAGCGTTTCAGATTAGTGATGTGTGCGTGAGATTGTTCAAGGAAGGGTGGTTTGAGACTGAGATAAAGGAGGACGATGATCCCAAGTTGTCTAAGATGAAGAAGGATGTGGTTGTTGGGGTTAAGGATACCAAAGAAGTTGACAATGATTTCTTCTTGGTTGTCGTCAAAATCTCAGATCATCAGGGTCCTCTTTCATCATCGTTTCCCATTGAGAACCGGAACACTCAGATGACTATGAAGGCTTTGAAGAATCATTTGGACAGGACAAAAAGTCTTCCATTTGTGAAGCGAATTTCTGATTTTCACCTTCTTCTTGTATTGGCAAGGGTTTTAGACTTGAATGCTGATGTCCCTGCATTGACGGCATGTGTGCACACACAGACTTCTATTCCAGAAGGTTACCAGATCCTTATTGAGTCTATGGCAAGTACCGCTTGA 1239 0.5117 MMLRLRSRDGLERVIVENPHTTTVSELKRIIEAQLRIPVHNQTLSTNQNLLLAKSREDLHRFTDMANPDLTLSSLNLAHGSIVFLTYEGERHVAGPAFNPAGSFGRKMTMDDLIAKQMRVTRQENPHCELVSFDRDCANAFQHYVNDTLAFAVKRGGFMYGTVSEEGKVEVDFIYEPPQQGSEENLLFFRDPEEEKLVEAIAAGLGMRRVGFIFTQTISQDKKDYTLSNREVLQAAEYHAESGLKEWVTAVVKLEVNDDMSADVHFEAFQISDVCVRLFKEGWFETEIKEDDDPKLSKMKKDVVVGVKDTKEVDNDFFLVVVKISDHQGPLSSSFPIENRNTQMTMKALKNHLDRTKSLPFVKRISDFHLLLVLARVLDLNADVPALTACVHTQTSIPEGYQILIESMASTA 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02192 412 FunFam NPL4-like protein 1 1 100 - -
Vimu6g02192 412 SUPERFAMILY Ubiquitin-like 1 90 IPR029071 -
Vimu6g02192 412 ProSiteProfiles Ubiquitin domain profile. 1 85 IPR000626 GO:0005515
Vimu6g02192 412 PANTHER NUCLEAR PROTEIN LOCALIZATION 4 1 89 IPR016563 GO:0006511
Vimu6g02192 412 CDD Ubl_AtNPL4_like 1 86 - -
Vimu6g02192 412 Gene3D - 1 101 - -
Vimu6g02192 412 ProSiteProfiles MPN domain profile. 130 271 IPR037518 -
Vimu6g02192 412 Pfam Nuclear pore localisation protein NPL4 1 85 IPR024682 -
Vimu6g02192 412 Pfam NPL4 family 157 283 IPR007717 -
Vimu6g02192 412 CDD MPN_NPL4 119 374 IPR007717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02192 Vimu-Chr6 19260797 19263687 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02192 K14015 - gmx:100811623 727.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02192 6 19260797 19263687 Vimu6g02192 6 19260797 19263687 ECH