Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02186 ATGGATTGGGTCATAGGACTTGCTTATATTGATAAGAATGTTGTTTCGCTACATATAGGATATAAAGTTCAATTTGCAAGTGACGATGATCCATTTAGGCAAACTGATCTCTTTCAGGACACCTTGGCGCTCAATAGCCCTTTCACTGAAACGGAGTTTGAAAATCTCAATCTGGACACTGAGATTGTAGAGGATCCTGAGCCTGCAGAAGACATGGCAACAGGTAAAAGGTGCGAGTATGAACAATATGTTCTTGATAGCGAGGATGAAGAAATGAATGACAGACATGTTGGCAAAGAATTTCTTGAGGATGAAACTAGTCCAACAGTGAAAATTCCTTCGACACTCTTCCAGAAAAGACTGCCCAAGCCACCTCGCGAGCAAGTGGAAGCAAACGCCACCACTTCTGGGAACTTTACTGCTGAACATAATATGCTTGAAGACGACAAAAGAGCTGTAGTTGATTCGGACAACTTTGATTCCAACGACCGTTTATATCCACCTGCAACCCTAAATCACATGCAGTCACCAGAGCCTGGGAATTCAACCCAAGCTGCACTTGGCTTTGTGGATAAGTACTTGTCTTCAAATGATTTGGACTTGCTTCAAGGAATTCACTGTGGAAAGACCGCTAGGGAGAAATCACCCAATGTCCTGAATGCAAGAGGACCACTAAATCTTGCTAAGATTAAAGCCCGAACTAAAAGTGAAGAGAAAGAACCTTTCAAATGGGTTGACAGTTGCCAACATGACAACAGAGGTCGTATGTTTGATCAAAAAATTGAAGCATCATCAAGTTTTGGAAGATACAAACAGATATATACGAGAAGAAGGAAAAAAGGTGGCCATCTTCACAGCCAAGGAAACTGTAGTAGAAGTGATACATTTGATGAGAAGTTAGGTCGAGGACCAAGAATCGCAATTGGAAATAATAACACTCTCAAGGAGTTGAATGTTCAACCAAGTTCTATAAGAGATAATGCTAATGTTTATTCCAGTGTAACACATGCAGAGGACATGTCTGATATTGGTTTAGGCACTCAAATGGCTGCTGAAGCAATGAATGCCTTAGCTTTAATGCCCCCTTATGGCTGCCAATTCAATGATACCCATCAACCAGAGAATGCATTAGACGTCTCTTTGACTGATTTGGCGGAGAATGAAACTCATCTGAAAAATTCTTCAAATATTCCGAATCCTAGTTTACATTCTATGAAAATAAAATCAAATAAGAAAAATGCATCCTCCTCTAGATTTAGTAAAATAACTTCTAGCTCATCTTGCAAGCACACTTACAAACAGGAGTCAAATGTTGTCTCGGGAAAAATGAAACAGATTATGAAGAGCAAGTCAACTACTGAGGGGCGGTTTGAAAATAATAATAGTTTCCCAGAATACAGTAAACATGTCTTACTGGAAGAGGTTTGCCCACTGGGAGAATATACAAGTTTCCAACCTACTTCCGAAGAGGAATCCGAACATAGGAACAATGACAGTGGACATCCAAGAATCAAAGATCAACCAAGCCATCGTACAGAGGAGAACAGTAATTTCAAGGAGAAGGGTATTAAACACAAGAGAAAGGGAACTGGTTTAGTGGCTGATCCAGTGAAGTTGGGTGCAAGGGCTAAGCGTATTAAATTCCTTGGCAATTCATGTATGCTTGCTAAGAAAGTCAAGTTGAATCATCTGACTGAAGTTAGCCCACAGTTATCTGCAACCCGCAGTTTTTCATGGACTGATTCTTGGGCTTATCCAAAAAGATCAAGAGGGAAAAGAAAGGAGGCTAATAGGGGAACCAATCTCAATGCACCATCTGTTTTGTGTGTTGATGGAAAAGAAAACAATGTCTTCTCCACTAGAAGTCTAGAGGACCTGGCCAATGCTTCATGTGTAGATGATGGCAGATGCTTATTACAGGGGGACTTTGTGCCACCAGGTTCATCTGGTGATGCAATGAAGGTACAAAACTTTCCTGATATGCACCCTTTATTGTTGGCACATGTTGAAAGATCATCAAACAAAAGTGTTGCACAATCAAGATCGGGAATTCGTGCTGCAGTTGTACCAAGTGAAGGTGTAAAAGTTTCAAATGTAAATCATTCATACATTGAGCGTCACAAAAAACTCTGTATAAAAACCCAGCCTAGGTCTTCACATTTGAAAGAGCTTACAAGATTAGGAGTTCCTGAGTCCATGTCAGATGTGTTGTGGAAAGATCTGAGACATCATAGAGATATGACAGACGTTCGAGTTCTGTTTAGTCAGCATTTGGATGACAGTATCATTAAGCGACAAAAAAAGATATTGAAACGTCTCAATATATCTGTTGCATCAAGTTCAATGGACGCCACACATTTCGTAGCTGACAAATTTACACGCACAAAGAATATGTTGGAAGCAATTGCTCTTGGGAAATTAATTGTGAATCACTTATGGCTTGAGAGCTGTGGACAAGCCAACTGTTTTATTGACGAGAAAAATTACATTCTGAGGGATATGAAAAAGGAAAAGGAAATAGGCTTCAACATGCCAGTTTCTCTTGCTCTCGCAAGAGAAAAGCCACTCCTAAAGGGTAAAAGAGTTTACATCACGCCACATGTTAAACCTGATAAGGAACTGATTGCAAGTTTGGTCACAGCTGTTCATGGCCAGGTAGTAGATCAAAGTCAGGTGTGTGGTGACATGAAGGATAATATCTTTGATGATCTGTTGATTCTTTCTTGTGAAGACGACCACGCAATATGCCACCGTTTATTTAAGAGAGGAACTGCAGTTTACAGTTCAGAGCTAGTTCTGAATGGAATTATAATCCAAAAATTGGAACTTGAGAGGTATGATGACACATTTGAATTAGTTCACTTGGAAGAGCCTTGTCCATTGGCTCAAGCACAACTTGCTCTATGCCTTGTAAATGATTATGTTTCAAGCAACTTAGGAGTAATCTTTTGA 2952 0.4001 MDWVIGLAYIDKNVVSLHIGYKVQFASDDDPFRQTDLFQDTLALNSPFTETEFENLNLDTEIVEDPEPAEDMATGKRCEYEQYVLDSEDEEMNDRHVGKEFLEDETSPTVKIPSTLFQKRLPKPPREQVEANATTSGNFTAEHNMLEDDKRAVVDSDNFDSNDRLYPPATLNHMQSPEPGNSTQAALGFVDKYLSSNDLDLLQGIHCGKTAREKSPNVLNARGPLNLAKIKARTKSEEKEPFKWVDSCQHDNRGRMFDQKIEASSSFGRYKQIYTRRRKKGGHLHSQGNCSRSDTFDEKLGRGPRIAIGNNNTLKELNVQPSSIRDNANVYSSVTHAEDMSDIGLGTQMAAEAMNALALMPPYGCQFNDTHQPENALDVSLTDLAENETHLKNSSNIPNPSLHSMKIKSNKKNASSSRFSKITSSSSCKHTYKQESNVVSGKMKQIMKSKSTTEGRFENNNSFPEYSKHVLLEEVCPLGEYTSFQPTSEEESEHRNNDSGHPRIKDQPSHRTEENSNFKEKGIKHKRKGTGLVADPVKLGARAKRIKFLGNSCMLAKKVKLNHLTEVSPQLSATRSFSWTDSWAYPKRSRGKRKEANRGTNLNAPSVLCVDGKENNVFSTRSLEDLANASCVDDGRCLLQGDFVPPGSSGDAMKVQNFPDMHPLLLAHVERSSNKSVAQSRSGIRAAVVPSEGVKVSNVNHSYIERHKKLCIKTQPRSSHLKELTRLGVPESMSDVLWKDLRHHRDMTDVRVLFSQHLDDSIIKRQKKILKRLNISVASSSMDATHFVADKFTRTKNMLEAIALGKLIVNHLWLESCGQANCFIDEKNYILRDMKKEKEIGFNMPVSLALAREKPLLKGKRVYITPHVKPDKELIASLVTAVHGQVVDQSQVCGDMKDNIFDDLLILSCEDDHAICHRLFKRGTAVYSSELVLNGIIIQKLELERYDDTFELVHLEEPCPLAQAQLALCLVNDYVSSNLGVIF 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02186 983 CDD BRCT_PAXIP1_rpt6_like 856 942 - -
Vimu6g02186 983 MobiDBLite consensus disorder prediction 278 304 - -
Vimu6g02186 983 SUPERFAMILY BRCT domain 733 847 IPR036420 -
Vimu6g02186 983 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 91 946 - -
Vimu6g02186 983 MobiDBLite consensus disorder prediction 391 427 - -
Vimu6g02186 983 Gene3D BRCT domain 855 951 IPR036420 -
Vimu6g02186 983 ProSiteProfiles BRCT domain profile. 742 831 IPR001357 -
Vimu6g02186 983 Gene3D BRCT domain 739 854 IPR036420 -
Vimu6g02186 983 CDD BRCT_MDC1_rpt1 750 824 - -
Vimu6g02186 983 SMART BRCT_7 744 821 IPR001357 -
Vimu6g02186 983 MobiDBLite consensus disorder prediction 487 529 - -
Vimu6g02186 983 Pfam Regulator of Ty1 transposition protein 107 BRCT domain 745 831 IPR001357 -
Vimu6g02186 983 MobiDBLite consensus disorder prediction 484 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02186 Vimu-Chr6 19219116 19222876 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02186 K14972 - gmx:102659913 1311.21