Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02185 ATGAAGTTTGAGAGTGAAGCGAAGAAACCCCGACCATTGGAAAGAAACACTGCCAACATTTCCCATTCAAGGGCTTTGTTTGCTGAGAGCTTCCACAGGCTGTTGTCTACTCAGACTGGAGGACTAATCTTTGATGGGGCATCAAATACTCCACAACCTTTAAGTCCTGAATTTCTGCTTCCACCAATTGCTAGATACATATCATATGATGCTCAGCATGCTACAAATGTTATCAAAAGGATCTCTCATTGCTCCCTGATGTGGTGGTTCAGGAAGCTGCAAGACAAGGTTGCACTGATCACCGGGGCAGCTAGTGGAATAGGAAAGGCCACAGCCACCAAATTTATCAACAATGGAGCTAAGGTTATTATTGCTGATATCAATCAACAGCTTGGTGAGGAGACGGAAAAAGAACTAGGATCTAATGCCACTTTCATAACATGTGATGTTACTCAAGAGTCAGACATATCCAATGCTGTTGAGTTTGCAATTTCTAAATACAAACAACTTGATATCATGTACAACAATGCAGGGGTAGCCTGCAAAAGTCCTCTAAGCATTGTTGACCTGGACATGGCCTTGTTTGACAAAATCATGGACATAAATGTTCGAGGTGCAGTGGCAGGTATCAAGCATGCAGCACGTGTGATGATCCCACGTGGAAGTGGGTCTATTCTCTGCACAGCAAGTGTCACAGGTGTTATGGGAGGTTTGGCTCAGCACACTTACTCAATATCTAAGTCTGCAGTGATAGGCATTGTTAAATCGCTGGCTTCTGAGCTATGCAGGCATGGAATCCGAGTCAATTGCATATCACCTTTTGCCATTCCAACACCTTTTGCTCTGGAAGAAATGAGTCAGATATATCCTCATGTTGATAGTCAGAGACATGTGGATATTATTCACAATGCCAGTGTTCTAAAGGGTGTCTATTGTGAACCCGATGATGTTGCTAATGCTGCACTTTTTCTTGCGTCCAATGATGCCAAGTATGTTAGTGGACACAACTTGGTTGTTGATGGAGGTTTCACATCTTTTAAGAATTTGGAATTTCCTCCACCAGATCAAGTGCAGTAG 1077 0.4299 MKFESEAKKPRPLERNTANISHSRALFAESFHRLLSTQTGGLIFDGASNTPQPLSPEFLLPPIARYISYDAQHATNVIKRISHCSLMWWFRKLQDKVALITGAASGIGKATATKFINNGAKVIIADINQQLGEETEKELGSNATFITCDVTQESDISNAVEFAISKYKQLDIMYNNAGVACKSPLSIVDLDMALFDKIMDINVRGAVAGIKHAARVMIPRGSGSILCTASVTGVMGGLAQHTYSISKSAVIGIVKSLASELCRHGIRVNCISPFAIPTPFALEEMSQIYPHVDSQRHVDIIHNASVLKGVYCEPDDVANAALFLASNDAKYVSGHNLVVDGGFTSFKNLEFPPPDQVQ 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02185 358 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 243 262 IPR002347 -
Vimu6g02185 358 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 223 231 IPR002347 -
Vimu6g02185 358 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 179 IPR002347 -
Vimu6g02185 358 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 94 344 IPR036291 -
Vimu6g02185 358 PRINTS Glucose/ribitol dehydrogenase family signature 307 327 IPR002347 -
Vimu6g02185 358 PRINTS Glucose/ribitol dehydrogenase family signature 97 114 IPR002347 -
Vimu6g02185 358 PRINTS Glucose/ribitol dehydrogenase family signature 243 262 IPR002347 -
Vimu6g02185 358 PRINTS Glucose/ribitol dehydrogenase family signature 168 179 IPR002347 -
Vimu6g02185 358 PRINTS Glucose/ribitol dehydrogenase family signature 217 233 IPR002347 -
Vimu6g02185 358 PRINTS Glucose/ribitol dehydrogenase family signature 264 281 IPR002347 -
Vimu6g02185 358 Pfam Enoyl-(Acyl carrier protein) reductase 102 344 - -
Vimu6g02185 358 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 91 347 - -
Vimu6g02185 358 FunFam Short-chain dehydrogenase reductase 83 348 - -
Vimu6g02185 358 Gene3D - 90 350 - -
Vimu6g02185 358 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 230 258 IPR020904 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02185 Vimu-Chr6 19214169 19218759 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02185 91 345 Miscellaneous Gene Families AT4G05530 31.154 8.96e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02185 - - gmx:100814306 484.182