Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02174 ATGACCACCCACACCAAGACCAACCTCGATGGAGTGCACTCTGATGTCAAGGTCGTCGAAAAACCAACCAAAGAAAGATCCCACGATCTCTTCCTCCGCTTTCTTGGTCTCTCTCTCACTCTTGTTGCAACCATTCTTGTTGGTGTAGACAATCAGACCAAAGTCATCTCCTACGCTGAAATGAAATTCAGAGCCACTGCTAAGTGGGAATATATGTCTGCTATGGTGTTTTTCGTGGTGTCAAACGCAATAGCATGTTCATATGCAGCAGCATCATTGGTGATAACAGTGATGGCAAGAAGCAGTGGTACAAGAAAAAGCGATTTCACAGATTTGGTGATAACAGCTTTAGACCTTGTGTTGATGGCACTGTTGTTCTCAGCCAATGGTGCAGCTTGTGCAGTGGGACTGATAGCGCAGAAGGGTAACAAGCACTTGCAATGGATGAAAGTGTGCGATGTCTTTGATACTTATTGCCGCCACATGACAGCTGCATTGGTCCTCTCCATTATTGGGTCCTCGGTGTTTCTCTTGCTGGTGCTGCATTCTGTTCTCAAACTCCATTACAGATCAAGAAGCTAG 582 0.457 MTTHTKTNLDGVHSDVKVVEKPTKERSHDLFLRFLGLSLTLVATILVGVDNQTKVISYAEMKFRATAKWEYMSAMVFFVVSNAIACSYAAASLVITVMARSSGTRKSDFTDLVITALDLVLMALLFSANGAACAVGLIAQKGNKHLQWMKVCDVFDTYCRHMTAALVLSIIGSSVFLLLVLHSVLKLHYRSRS 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02174 193 PANTHER CASP-LIKE PROTEIN 1U1 20 188 IPR044173 -
Vimu6g02174 193 Pfam Casparian strip membrane protein domain 25 173 IPR006702 -
Vimu6g02174 193 NCBIfam plant integral membrane protein TIGR01569 30 186 IPR006459 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02174 Vimu-Chr6 19124712 19126032 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02174 - - gmx:100817307 283.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02174 6 19124712 19126032 Vimu6g02174 6 19124712 19126032 ECH