Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02172 ATGGCTGCCGAAGGAGAAAATATTGAGCTTAAATTTCGTATATATGATGGAACTGATATAGCACACAATTTCTATTCGTCATCAACAACCATTGCTACCCTTAAGCAAAAGCTAATTGCTGAGTGGCCTCAAGGTAAAACAATTACACCAAAGGTAGTAAGTGACCTAAAACTCATACATGCCGGTAAGATTTTGGAAAACAACAAAACTCTGGCTGATTCCAGAATAACATTTAGTGACATCCCTGGAGGTTTTATTACCATGCATGTTGTAATACAACCTCGAACGACAAAAAAGAAAACAGGTAAATTTAAAAGAACCAAGAGGAGAAACAAAAGACAAATTCATGTTCATGCATCATTGTTTAGTTCCTTTTTATAA 381 0.3517 MAAEGENIELKFRIYDGTDIAHNFYSSSTTIATLKQKLIAEWPQGKTITPKVVSDLKLIHAGKILENNKTLADSRITFSDIPGGFITMHVVIQPRTTKKKTGKFKRTKRRNKRQIHVHASLFSSFL 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02172 126 CDD Ubl_MUBs_plant 8 95 - -
Vimu6g02172 126 PIRSF MUB 1 120 IPR017000 -
Vimu6g02172 126 ProSiteProfiles Ubiquitin domain profile. 8 76 IPR000626 GO:0005515
Vimu6g02172 126 PANTHER UBIQUITIN-LIKE PROTEIN 3 HCG-1 PROTEIN 4 111 IPR040015 -
Vimu6g02172 126 SUPERFAMILY Ubiquitin-like 4 98 IPR029071 -
Vimu6g02172 126 Pfam Ubiquitin-2 like Rad60 SUMO-like 6 111 IPR039540 -
Vimu6g02172 126 Gene3D - 1 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02172 Vimu-Chr6 19108528 19109092 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02172 - - gmx:100785440 162.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02172 6 19108528 19109092 Vimu6g02172 6 19108528 19109092 ECH