Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02164 ATGTACGCGCCCATCTCCTCTCTATCCAGTCACTCTGTGGCCATGAATAGCTTAACGGCGAGTTTCACAGCTCGAATATGCGTCACGCGCCGCGACCTACTCCATATGCGACGCCGTTCCACATTCAGCCGCGTCGCCATCACATATCCAAGAATCGTTTGCATGGCGGAACCTTATCTGATAACGAAGTTAGATTCTGCGGAGAAAACCTGGAAAGAATTATCGGTCAAGCTTGCTGATCCAGACATTGTGTCTGATCCAAAGGAGTATCAGAAGCTAGCACAATCAGTGGCAGAGCTTGATGAGGTTGTGTCCGTCTATAGGAAATTTAAGGACTGTGAGAAGCTTCTAGAAGAAACCAAAGCTTTAGCGAAGGATGCTGGAAATGATGAGGATATGGTGGAGATGATATCTTATGAAATCGAATCGTTGTCCAAGCAACTCGCTGAGCTCGAGGACCAGCTTAAGGTGCTACTGCTTCCCAGTGATCCTCTGGATGCTAGAAACATAATGATTGAAGTACGAGCAGGAACTGGTGGTGACGAGGCTGGAATTTGGGCTGGTGATCTTGTCCGAATGTATGAAAGATACAGTGAAAGGAATTCTTGGAAATATTCTCTCGTCTCAAGCTCTGCGGCAGAAAAAGGAGGGTACAAAACTTATGTAATGGAGATAAAAGGAAATCGTGTTTACAGTAAATTGAAATATGAATCTGGCGTTCACCGAGTTCAACGTGTTCCTCTAACAGAAGCACAGGGCCGGGTACATACTTCTACTGCAACAGTGGCTATCATGCCAGAGGCTGATGAAGTTGAAATCGTAATTGACCCCAAAGATATTGAACTGACGACTGCACGTTCTGGGGGTGCTGGAGGTCAGAATGTAAACAAGGTTGAAACAGCCATTGATCTCTTCCATAAACCAACGGGAATCCGCATCTTTTGTACTGAAGAAAGAACACAACTTAAAAACAAGAATCGCGCATTTCAGTTGCTCCGAGCAAAACTATATGAGATCAAGGTAAGGGAACAGCAAGAGTCATTACGAAACCAAAGGAAATCACAGGTCGGTACAGGTGCACGAGCAGAAAAAATTCGGACATACAATTATAAGGACAACAGGGTTACTGACCACAGATTGAAGACAAACTACGAGCTCACATCTTTTCTTGATGGTGACATAGAAGATGCTGTTCAGTCTTGCGCTACAATGGAGCAAAAGGAACTTCTGGAAGAACTTGCTGAATCTGTAGGAGCTACGGCTGGCTGA 1269 0.45 MYAPISSLSSHSVAMNSLTASFTARICVTRRDLLHMRRRSTFSRVAITYPRIVCMAEPYLITKLDSAEKTWKELSVKLADPDIVSDPKEYQKLAQSVAELDEVVSVYRKFKDCEKLLEETKALAKDAGNDEDMVEMISYEIESLSKQLAELEDQLKVLLLPSDPLDARNIMIEVRAGTGGDEAGIWAGDLVRMYERYSERNSWKYSLVSSSAAEKGGYKTYVMEIKGNRVYSKLKYESGVHRVQRVPLTEAQGRVHTSTATVAIMPEADEVEIVIDPKDIELTTARSGGAGGQNVNKVETAIDLFHKPTGIRIFCTEERTQLKNKNRAFQLLRAKLYEIKVREQQESLRNQRKSQVGTGARAEKIRTYNYKDNRVTDHRLKTNYELTSFLDGDIEDAVQSCATMEQKELLEELAESVGATAG 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02164 422 FunFam Peptide chain release factor 1 166 276 - -
Vimu6g02164 422 Pfam RF-1 domain 269 379 IPR000352 GO:0003747|GO:0006415
Vimu6g02164 422 Gene3D - 54 164 - -
Vimu6g02164 422 SUPERFAMILY Release factor 69 410 IPR045853 -
Vimu6g02164 422 FunFam Peptide chain release factor 1 276 341 - -
Vimu6g02164 422 Gene3D - 276 333 - -
Vimu6g02164 422 Gene3D - 166 275 - -
Vimu6g02164 422 Gene3D - 334 417 - -
Vimu6g02164 422 Pfam PCRF domain 68 262 IPR005139 GO:0006415
Vimu6g02164 422 FunFam Peptide chain release factor 1 338 417 - -
Vimu6g02164 422 PANTHER LD18447P 55 416 - -
Vimu6g02164 422 Hamap Peptide chain release factor 1 [prfA]. 60 414 IPR004373 GO:0006415|GO:0016149
Vimu6g02164 422 SMART PCRF_a_2 122 237 IPR005139 GO:0006415
Vimu6g02164 422 Coils Coil 134 154 - -
Vimu6g02164 422 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 286 302 IPR000352 GO:0003747|GO:0006415
Vimu6g02164 422 NCBIfam peptide chain release factor 1 56 415 IPR004373 GO:0006415|GO:0016149
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02164 Vimu-Chr6 19058595 19063615 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02164 K02835 - gmx:100805037 756.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02164 6 19058595 19063615 Vimu6g02164 6 19058595 19063615 ECH