Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02160 ATGATTTCTGCAGGAGGTAGGGATGCTATAAAGGGGCTGGGTTTAGGGTTGGGGTTAGGGCTGGGTGCTGGGAGGAGAGAGATGGTGGAGTCTGAGCTCGAAGAGGGTGAGGCGTGCTCCTTTCAGAACCACGAGGATGATGATGCCACCGTTGATCCCGATGTTGCCCTCTCTTACATTGATGAAAAAATTCAAGATGTTCTGGGACACTTTCAGAAGGATTTTGAGGGTGGGCTGTCTGCTGAGAGTCTTGGGGCAAAATATGGTGGTTACGGATCATTTTTGCCCACCTATCAGCGATCTCCTGTCTGGTCTCATCCAAGGACTCCACAAAAAAATCATAGTCAAAATACACCAAAATCTCCGAATAATTTGCTACCAGAGGGTGGGCAGGGTGACGCTGTACAATGTTCCACTGGAACTCAGTCATCAAGACTTGGCCCAGGTTCTGGTAACTCTTTGAGGATGGCTGCAAACAAGGGTCTCTATCTGGAAGATGGAACCCATCAAGAAAAGTACTTGATAACCTCTAATGTTGATACATCCACTTCTAAGCACGAGTCTCTAAACAAGAAATTTGCTAGCACATCGGACCAGAAGCCACTGAAGGTTCGAATCAAAATGGGTCCAGATAATTTATCAACACGGAAAAATGCTGCAATATACAGTGAAATTGGTCTGGATGTGTCTCCATCATCATCACTGGATGACAGTCCCTCAGAAAGTGAGGGGATTTCTCGTGATCCTCATGAAGCTCCTTTTGAATCTCCAACCATTATCCTTCAGATTATGACCGACCTCCCTCAGCTATTGTCACCACTTTCTGAAAGTATCATTGAATTAAGCATAAAGGAAATGCGTGCCAAAGATAGCATTCCTGGTCTTGTTCATATGGATGATGCAGAAAGTTTTGACATGTCACTAAATGAATCTAATAATGTGAAAGTAGATAGAAAATTGTCACGGGGGAATGGTAGGAAAATGAAATCTCTGGAGGGTTGTGAATCCTCAATGGAAGTCAAGGGTTCTACAAAGAAGAATGGTCGGATTGATGCTGGAGTGTTGTCAAGAAAGGAACAAAGTACAGATGCATCAACTATGGAGGAGCTAGTTTCAAATACTATGAAGCTTCCACTTTTATCCAGTTCATATTCTTTCAGTGATGACTTGGTTAGGGCTGATGATGGGCCGTGTGACTCTTTGAAGGAAACCCACAAAGTTATGGTGAGGGAGAAAACCTTCTCTGGTCAGGGTCAAAAGGAAGGGCTGGAGCCAACATCTACTGAGGTGAATGGTTTTTCTGAAAGGACGAAGGGAAGCTCAAGAAGAAAAGTTGTGGGAGATAAGGTTCCTTTTGATGACTATATAGTGAAAGAAAATTCTCAAGGAGATAATAATTGCCACTCAATAATGGCTGAATCTAACGTTTCCAAAGTTAGGACAGCATCAAACACTGAAGAGCCTCCTAAGAAGGCTAATCAGAGAGGTAGCCTATCTGAACAAGACAGTATGGCAATACCTGTTGTGACAGAACATCCTGTTCTGGTTGGTAAGAAGAAGGCAAAGGGAAGTCATGACACCGTGGTTATGGAAAGGGAAAAAGAAAAGATTGGATCTTCTTCGGCTCCTAAAACAAAAAGGAGTTCTGATGATAGTTCTGCATCAAAAAATGAGACTGAAGATGTTAGAGCACAAAAGAGTCTTGGAAAGACTCGAGATACATACAGAGATTTCTTTGGAGAATTGGAAGATGAGGAGGACAGAATCGATTCGCTGGAGACCCCATTTGAAGAAAAACTAAAGGAACCTGAGGTGGTTGAGAGGAGTGCACCTACAACTAGTTCTGGAGCAAAGGAGAGACCAGGTGCTAAGAAAGCTGATAAGCTGTTAGCAGCTGAAATATACCCTAAATCAGCCACAAATATTTGGTGCACTGGAAATGCAAATGGTACTGATGCTGAGAGTGGAAAAGGGATTACTTTAATGATACCTCCCGTTGAGATGGAAGATAATTGGGTGCAATGTGACAGATGTCATAAATGGCGTCTTCTTCCTGTTGGAACAAATCCTGATAACCTACCCGAAAAGTGGCTATGTAGTATGCTTAACTGGCTGCCCGACATGAATCGATGTAGCTTTAGTGAGGATGAAACCACTAAAGCACTTATTGCATTATACCAAGGACCTCCTTTTGATGGTCAAAGCAACCTGCAAAATGTCTCTGGCAGTGTTATGGTGGGAGGAGCCGTGCCAACGTCCCAGAATCCTAACCAGCACCTGCTAATTAATGATGTGCATGTGGCACCTGGGGGGAAGAAAAGGATTGTGAAGGAGATACCAAATTCTACAAATAAAGAAAACTTTTCTCAATCCTCGTATCCTATGAAGAAAAACTTCGCGTCAGCAGTGAAAAGTAGGAGTTTAAATGATGTGAACAAATCTCCTGTCATGAGTGAGGCTGATGTTCCATCAGAGAAACACAAAAATAAGCACAGGACGCAGGAGCACAGTTCTGATAGAGGTGATACAAAGAATATGAAGGTCAAAAGCAGGAGGGATCATGATCAAGATTTTCCTAGGCCATCCAAGAAATCTAAGACTGACAAGGCTCATTCTACCAATGAAGAGTGGGTAGAACAGAGTGGAACTACTAGGAAGGTGGGTGTTCAAAGTTCAAATAGCACTTTTCCAACTACTTCAGTTGGCAAAGATCGACCAAGACAGAAAGCCCACTCTTCTTCAAGGGACTCCAAATCAAGAAAAGACAGGATTCCAGTTTCTGCTGAAAACACAAGAGATAAAGGTCAGGGTTCGTTGGATGAGGGATCTCTGGATCTGGGGAATTGTGATTCGATTGGTAGTGTGAAAAAAAGGAAACTTAAGGGATATCAGGATGCTATAACTTACAGCCCAGGTAATCCTCGCATACAGGAGAGCAAAACTTCTGAGCATGATTTCAGCAATTCAAGGAAGGAAAAGAAGGCAAAAAGTTCAAAATCTGGAGGCAAAGAATCAAGTACCAGTAAAGGTAGTGGTAGGACTGACAAAAAAGTTAGTCATGCAAAGAACCAGAAATTCAGGCAAAACCCTGAGAGCAGTCTGTCACAGCGGAGCTTGGATGGCATGGACTGTTCAAAAAGGGACTTGGGGTCTTTACAGGTTTCTGTTGCTGCCACTTCAAGCTCTTCTAAGGTTTCTGGCTCTCACAAAACCAAAGCCAGCTTCCAGGAAGTGAAGGGCTCACCAGTGGAATCGGTGTCTTCATCACCCATCCGAGTTTTAAATGCTGATAAGCTTTCAAACAAGGAAATTATAGGGAAAGATGATTCACGTGATGTTGCTGCTGTGGATAGTCCAAGAAGATGCTCAAATCGTGATGATGATGGTGGGAGTGATCGATCTGGAGCGGCCAGGAAGGATAAATCTTTCACCATTGCCAACAAGCCAGATTTTCAGGACAGGGGTGTTAATTTTTCTGATACTAAGCTTAAAGCTGAAACAACCAGCTATTGTACAAATGGTGGTGTTGACACCATAGTCCCAGATGGGACCTATGCAGGCAAAGAGCATATTAAACAGCCAGGTGAAGACAAAACTGATGTTTATCATGCTAATATGTCTCATACAAGGAAGAATGGCATAGAATCAGGTTTGGAGGACAACAATGACGGCTGTAAGTCAGAGTCCCATGCAGATAAGGTCAATAATGCTAGTTCTTCAAGTCAACTGAAAAATCAGTCTCCTCTAGGTGAGACAAAGCATAAGGATGGAAAAAATAAGTTGCAGGAGAAGTTTGGGATCAAGCCTGACCAAAGTGAGAATATACATACTGTGAAGAAAGATTATGCAGAGAAAATTGAGGCTAGGAAAAAAGAGAATCACTTAAATCGAGGTCATGACTTTCAAGATGTTAGTGTGGATGTCCTTTGCAAACAGGATGCATTTCATGCTCCCCCGCAGACTCAGTTACCAGACTCGGATAGATCCACAAAGAGGTCTCTGTTGGAAAGAACTGGTGATCAAGAAGTGCATGGAAAAGGGAAGCTGTTGTCATCATTGCCATCGGAAGGATCTCAAGTTGAGACATTGGGCCGATGCCCACGACCAGTTGGTTTACATAAAGGAAATGGTGATGTTGAAGTTGACCCTTCCAAAGTTGATGATGTGTCAAAGCTTCCAAAAAGGCAATCGAAAAAGACTGACCATCAAAATGGAAATCAGCAAACTGGTTCAAGAAATCCCGTACTTAATGGTCACAGGTCGAAGGAGCTTGATGCCCCTAGCCCAGTTAGAAGGGATTCTTACAGCCATGCTGCTAACAATGCTGTGAAAGAAGCTAAAGATCTTAAGCATCTGGCTGATCGTCTTAAGCATTCTGGATCCACTGGTGAGAGCACTAGTCTTTACTTCCAGGCAGCCCTCAAATTTCTTCACGGAGCCTCTCTGTTAGAATCTGGCAACAGTGATAATTCTAAACACAGTGAGATGATTCAATCAAAACAAATGTATAGTAGCACTGCAAAATTGTGCGAGTTTTGTGCCCACGAATATGAGAAATCAAAAGACATGGCTTCAGCTGCACTAGCCTACAAATGCATGGAGGTAGCATATATGAGGGTAGTATATTCTTCACACACCAGTGCAAGCAGAGATCGGCATGAGTTGCACAATACACTGCAAATGATTCCTCTTGGTGAGTCTCCATCGTCATCTGCCTCTGATGTTGACAATGTTAACAACTCTACAGTTGCTGAAAAGGTTGTCACCATATCTAAGAGTGTCAATTCGCCCCAAGTAGCTGGAAACCATGTTGTTGCTGCACGACATCGTCCTAATTTTGTGCGATTGCTCGGTTTTGCTGTGATATTTGGAATTAAAAGCATGTACCAATTGCAGGCTCAGGATGTTACTTTTGCCATGGAAGCATCAAGGAAATCACGGAATGCTTTTGCAGCTGCTAATTCAAGCCTAGGTGTGGGCAAGAATGCAGATGGTATCTCATCTATCAAAAAGGCTCTTGATTTTAGCTTTCAAGATGTGGAGGGGTTACTTCGTCTGGTACGGATTGCTGTGGAGGCCATTAATCGTTAA 5091 0.4304 MISAGGRDAIKGLGLGLGLGLGAGRREMVESELEEGEACSFQNHEDDDATVDPDVALSYIDEKIQDVLGHFQKDFEGGLSAESLGAKYGGYGSFLPTYQRSPVWSHPRTPQKNHSQNTPKSPNNLLPEGGQGDAVQCSTGTQSSRLGPGSGNSLRMAANKGLYLEDGTHQEKYLITSNVDTSTSKHESLNKKFASTSDQKPLKVRIKMGPDNLSTRKNAAIYSEIGLDVSPSSSLDDSPSESEGISRDPHEAPFESPTIILQIMTDLPQLLSPLSESIIELSIKEMRAKDSIPGLVHMDDAESFDMSLNESNNVKVDRKLSRGNGRKMKSLEGCESSMEVKGSTKKNGRIDAGVLSRKEQSTDASTMEELVSNTMKLPLLSSSYSFSDDLVRADDGPCDSLKETHKVMVREKTFSGQGQKEGLEPTSTEVNGFSERTKGSSRRKVVGDKVPFDDYIVKENSQGDNNCHSIMAESNVSKVRTASNTEEPPKKANQRGSLSEQDSMAIPVVTEHPVLVGKKKAKGSHDTVVMEREKEKIGSSSAPKTKRSSDDSSASKNETEDVRAQKSLGKTRDTYRDFFGELEDEEDRIDSLETPFEEKLKEPEVVERSAPTTSSGAKERPGAKKADKLLAAEIYPKSATNIWCTGNANGTDAESGKGITLMIPPVEMEDNWVQCDRCHKWRLLPVGTNPDNLPEKWLCSMLNWLPDMNRCSFSEDETTKALIALYQGPPFDGQSNLQNVSGSVMVGGAVPTSQNPNQHLLINDVHVAPGGKKRIVKEIPNSTNKENFSQSSYPMKKNFASAVKSRSLNDVNKSPVMSEADVPSEKHKNKHRTQEHSSDRGDTKNMKVKSRRDHDQDFPRPSKKSKTDKAHSTNEEWVEQSGTTRKVGVQSSNSTFPTTSVGKDRPRQKAHSSSRDSKSRKDRIPVSAENTRDKGQGSLDEGSLDLGNCDSIGSVKKRKLKGYQDAITYSPGNPRIQESKTSEHDFSNSRKEKKAKSSKSGGKESSTSKGSGRTDKKVSHAKNQKFRQNPESSLSQRSLDGMDCSKRDLGSLQVSVAATSSSSKVSGSHKTKASFQEVKGSPVESVSSSPIRVLNADKLSNKEIIGKDDSRDVAAVDSPRRCSNRDDDGGSDRSGAARKDKSFTIANKPDFQDRGVNFSDTKLKAETTSYCTNGGVDTIVPDGTYAGKEHIKQPGEDKTDVYHANMSHTRKNGIESGLEDNNDGCKSESHADKVNNASSSSQLKNQSPLGETKHKDGKNKLQEKFGIKPDQSENIHTVKKDYAEKIEARKKENHLNRGHDFQDVSVDVLCKQDAFHAPPQTQLPDSDRSTKRSLLERTGDQEVHGKGKLLSSLPSEGSQVETLGRCPRPVGLHKGNGDVEVDPSKVDDVSKLPKRQSKKTDHQNGNQQTGSRNPVLNGHRSKELDAPSPVRRDSYSHAANNAVKEAKDLKHLADRLKHSGSTGESTSLYFQAALKFLHGASLLESGNSDNSKHSEMIQSKQMYSSTAKLCEFCAHEYEKSKDMASAALAYKCMEVAYMRVVYSSHTSASRDRHELHNTLQMIPLGESPSSSASDVDNVNNSTVAEKVVTISKSVNSPQVAGNHVVAARHRPNFVRLLGFAVIFGIKSMYQLQAQDVTFAMEASRKSRNAFAAANSSLGVGKNADGISSIKKALDFSFQDVEGLLRLVRIAVEAINR 1696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02160 1696 MobiDBLite consensus disorder prediction 820 875 - -
Vimu6g02160 1696 MobiDBLite consensus disorder prediction 592 606 - -
Vimu6g02160 1696 MobiDBLite consensus disorder prediction 414 442 - -
Vimu6g02160 1696 MobiDBLite consensus disorder prediction 1249 1278 - -
Vimu6g02160 1696 MobiDBLite consensus disorder prediction 549 569 - -
Vimu6g02160 1696 MobiDBLite consensus disorder prediction 1329 1344 - -
Vimu6g02160 1696 MobiDBLite consensus disorder prediction 1378 1401 - -
Vimu6g02160 1696 MobiDBLite consensus disorder prediction 1316 1434 - -
Vimu6g02160 1696 MobiDBLite consensus disorder prediction 323 346 - -
Vimu6g02160 1696 MobiDBLite consensus disorder prediction 1213 1230 - -
Vimu6g02160 1696 Gene3D - 663 721 - -
Vimu6g02160 1696 MobiDBLite consensus disorder prediction 102 125 - -
Vimu6g02160 1696 ProSiteProfiles Zinc finger CW-type profile. 666 719 IPR011124 GO:0008270
Vimu6g02160 1696 Pfam CW-type Zinc Finger 671 717 IPR011124 GO:0008270
Vimu6g02160 1696 Coils Coil 1439 1459 - -
Vimu6g02160 1696 MobiDBLite consensus disorder prediction 1009 1024 - -
Vimu6g02160 1696 MobiDBLite consensus disorder prediction 1025 1040 - -
Vimu6g02160 1696 PANTHER CW-TYPE ZINC FINGER 26 1696 - -
Vimu6g02160 1696 MobiDBLite consensus disorder prediction 419 435 - -
Vimu6g02160 1696 MobiDBLite consensus disorder prediction 904 939 - -
Vimu6g02160 1696 MobiDBLite consensus disorder prediction 134 150 - -
Vimu6g02160 1696 MobiDBLite consensus disorder prediction 804 1156 - -
Vimu6g02160 1696 MobiDBLite consensus disorder prediction 1402 1416 - -
Vimu6g02160 1696 MobiDBLite consensus disorder prediction 515 541 - -
Vimu6g02160 1696 MobiDBLite consensus disorder prediction 978 1000 - -
Vimu6g02160 1696 MobiDBLite consensus disorder prediction 586 624 - -
Vimu6g02160 1696 MobiDBLite consensus disorder prediction 1171 1278 - -
Vimu6g02160 1696 MobiDBLite consensus disorder prediction 102 153 - -
Vimu6g02160 1696 MobiDBLite consensus disorder prediction 477 504 - -
Vimu6g02160 1696 MobiDBLite consensus disorder prediction 1052 1095 - -
Vimu6g02160 1696 MobiDBLite consensus disorder prediction 1189 1205 - -
Vimu6g02160 1696 MobiDBLite consensus disorder prediction 1101 1147 - -
Vimu6g02160 1696 MobiDBLite consensus disorder prediction 1231 1248 - -
Vimu6g02160 1696 MobiDBLite consensus disorder prediction 876 902 - -
Vimu6g02160 1696 MobiDBLite consensus disorder prediction 228 252 - -
Vimu6g02160 1696 MobiDBLite consensus disorder prediction 477 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02160 Vimu-Chr6 19024756 19033651 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02160 - - var:108328921 3083.89