LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu6g02147	ATGGCCACCGTAATCGATGGCAAGGTCGTTGCGCAAACCATCCGATCTGAAATCGCCGACGAGGTGCGCCTCCTCTCTCAAAAATACGGCAAGGTTCCAGGATTAGCAGTGGTGATAGTAGGGAACAGGAAGGATTCACAAAGCTATGTGGGAATGAAGAGAAAGGCGTGCGCTGAATTGGGAATCAAGTCCTTCGATGTGGACCTTCCAGAGCAAATATCTCAAGCTGAGCTAATAAAGCAAGTTCATGAGTTGAATGCTAACACTGATGTTCATGGTATTTTGGTTCAGCTTCCGTTGCCTAAGCACATAAATGAAGAGAAAGTTCTGTCTGAAATTAGCCTCGAGAAGGATGTGGATGGCTTTCATCCGTTGAACATTGGCAAGCTTGCAATGAAAGGCAGAGACCCCCTGCTTCTTACACTTGTTAGCAAACTCTGTGATCCTCACTACACTAAACCTGCATGCCTTGAACTATTACAACGAAGTGGTGTAACAATAAAGGGAAAAAAGGCAGTTGTGGTTGGCAGAAGCAACATAGTTGGATTACCAGCTTCATTGCTGCTTTTGAAAGCAGATGCTACAGTTACTATTGTACATTCACACACAAGTCAACCAGAAAATATCATACGTGAAGCGGATATTGTTATTGCAGCAGCTGGACAGCCAAAGATGATCAAAGGAAGTTGGATCAAACCTGGAGCGGCAGTCATAGATGTTGGCACAAATGCTGTTGATGACCCAACGAGGAAGTCTGGTTACAGGCTTGTTGGAGATGTAGATTTTGAGGAAGCATCTAAAACTGCAGGTTGGATTACTCCTGTTCCTGGTGGTGTAGGTCCAATGACGGTCACAATGTTGTTGAAGAATACTTTGGAGGGAGCTAAGCGCTATATTGAGCAAAATAATTGA	912	0.443	MATVIDGKVVAQTIRSEIADEVRLLSQKYGKVPGLAVVIVGNRKDSQSYVGMKRKACAELGIKSFDVDLPEQISQAELIKQVHELNANTDVHGILVQLPLPKHINEEKVLSEISLEKDVDGFHPLNIGKLAMKGRDPLLLTLVSKLCDPHYTKPACLELLQRSGVTIKGKKAVVVGRSNIVGLPASLLLLKADATVTIVHSHTSQPENIIREADIVIAAAGQPKMIKGSWIKPGAAVIDVGTNAVDDPTRKSGYRLVGDVDFEEASKTAGWITPVPGGVGPMTVTMLLKNTLEGAKRYIEQNN	303

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu6g02147	303	ProSitePatterns	Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1.	75	100	IPR020867	GO:0003824
	Vimu6g02147	303	Gene3D	Leucine Dehydrogenase, chain A, domain 1	7	293	-	-
	Vimu6g02147	303	SUPERFAMILY	Aminoacid dehydrogenase-like, N-terminal domain	1	121	IPR046346	-
	Vimu6g02147	303	Gene3D	-	5	275	-	-
	Vimu6g02147	303	FunFam	Bifunctional protein FolD	147	275	-	-
	Vimu6g02147	303	PRINTS	Tetrahydrofolate dehydrogenase/cyclohydrolase family signature	109	130	IPR000672	GO:0004488
	Vimu6g02147	303	PRINTS	Tetrahydrofolate dehydrogenase/cyclohydrolase family signature	214	243	IPR000672	GO:0004488
	Vimu6g02147	303	PRINTS	Tetrahydrofolate dehydrogenase/cyclohydrolase family signature	74	101	IPR000672	GO:0004488
	Vimu6g02147	303	PRINTS	Tetrahydrofolate dehydrogenase/cyclohydrolase family signature	33	55	IPR000672	GO:0004488
	Vimu6g02147	303	PRINTS	Tetrahydrofolate dehydrogenase/cyclohydrolase family signature	272	290	IPR000672	GO:0004488
	Vimu6g02147	303	PRINTS	Tetrahydrofolate dehydrogenase/cyclohydrolase family signature	255	271	IPR000672	GO:0004488
	Vimu6g02147	303	CDD	NAD_bind_m-THF_DH_Cyclohyd	116	296	IPR020631	GO:0004488
	Vimu6g02147	303	FunFam	Bifunctional protein FolD	7	141	-	-
	Vimu6g02147	303	Pfam	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain	123	297	IPR020631	GO:0004488
	Vimu6g02147	303	Pfam	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain	5	120	IPR020630	GO:0004488
	Vimu6g02147	303	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	122	297	IPR036291	-
	Vimu6g02147	303	ProSitePatterns	Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2.	276	284	IPR020867	GO:0003824
	Vimu6g02147	303	Hamap	Bifunctional protein FolD [folD].	2	299	IPR000672	GO:0004488
	Vimu6g02147	303	PANTHER	C-1-TETRAHYDROFOLATE SYNTHASE, CYTOPLASMIC-RELATED	2	296	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu6g02147	Vimu-Chr6	18941332	18943592	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu6g02147	-		-	gmx:100792682	531.946

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu6g02147	6	18941332	18943592	Vimu6g02147	6	18941332	18943592	ECH