Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02146 ATGGCTGTGGTTGCAGTGCAGCAATTCGTGTGCTTCGCAGATTCAAATTGGAGGAATATAGCAAGACCATGCATTCCCTCTCACACTACGATTCTTATACATTCACGCAAAAAAACTCAATTTTCTCTGATTTCATGCTCTTCATCACAGACACCAGAAGTTGGTACTCAAACCGCTGAATCCTGCGTCAATTTGGGTCTCGAGCTCTTCTCCAAAGGACGGGTAAAAGATGCTTTAACCCAATTTGAAACTGCACTTTCCCTGAACCCTAATCCAGTGGAGGCCCAAGCTGCCTACTACAACAAAGCTTGCTGCCATGCATACAGGGGAGAAGGAAAGAAAGCAGCTGATTGTCTCCGCACTGCTTTGAAGGAATACAACCTGAAATTTGGTACCATACTCAATGATCCTGATTTGGCCTCCTTCAGAGCTTTGCCTGAATTCAAGGAACTACAAGAAGAGGCTAGGCTTGGCGGGGAGGATATTGGCTACAGTTTTCGGCGAGATCTAAAACTTATTAGTGAAGTTCAAGCACCATTTCGTGGGGTTAGGAGATTTTTTTATATAGCACTGACAGCAGCTGCAGGAATATCATTGTTTTTTACTGTGCCCAGGCTAATTCGTGCAATCAGTGGTGGTGATGGTGCTCCTGATCTCTTGGCAACTTCTGGGAATGCTGCCATTAATATTGGAGGTATTGTTGTTCTTGTGGCATTGTTCTTTTGGGACAATAAAAAAGAGGAGGAACAACTTGCACAAATATCTCGAGACGAGACACTATCAAGGTTGCCTTTGCGGCTTTCAACTAATCGAGTAGTTGAACTTGTGCAGCTACGGGATACAGTTAGACCAGTTATATTAGCAGGAAAAAAGGAAACAGTGTCTCAGGCTATGCAAAGAGCCGAGAGATTTCGCACGGAGCTCCTTAAACGTGGTGTTCTGTTAGTTCCTGTTATCTGGGGAGAAGGTCGGGAAACAAAAATTGAGAAAAAAGGATTTGGTCTGCAGCCAAAAGCTGCTGAATCTCTTCCATCTATTGGGGAAGATTTTGAGAAGCGAGCACAATCCATAACTGCAAAATCGAAGTTGAAATCTGAAATTAGGTTCAAGGCTGAGGTTGTGTCTCCTGCAGAATGGGAAAGGTGGATAAGAGATCAACAGAAATCTGAAGGAGTTTCACTCGGTGAAGATGTGTACATAATACTAAGGTTAGATGGAAGAGTTCGAAGATCAGGGAAATTTGCTGGCTGTCATGAAAAACTGATCATGGTTAGACTTGGCTCACTACCCCTGATGCCATTACCAGGTATGCCTGATTGGCAGCAAATTGTAAAGGAGCTACCACCAATGGAAGCATTTTTAAGCAAGCTGGAAAGATGA 1380 0.4362 MAVVAVQQFVCFADSNWRNIARPCIPSHTTILIHSRKKTQFSLISCSSSQTPEVGTQTAESCVNLGLELFSKGRVKDALTQFETALSLNPNPVEAQAAYYNKACCHAYRGEGKKAADCLRTALKEYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYSFRRDLKLISEVQAPFRGVRRFFYIALTAAAGISLFFTVPRLIRAISGGDGAPDLLATSGNAAINIGGIVVLVALFFWDNKKEEEQLAQISRDETLSRLPLRLSTNRVVELVQLRDTVRPVILAGKKETVSQAMQRAERFRTELLKRGVLLVPVIWGEGRETKIEKKGFGLQPKAAESLPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPAEWERWIRDQQKSEGVSLGEDVYIILRLDGRVRRSGKFAGCHEKLIMVRLGSLPLMPLPGMPDWQQIVKELPPMEAFLSKLER 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02146 459 FunFam Protein LOW PSII ACCUMULATION 1, chloroplastic 46 152 - -
Vimu6g02146 459 Gene3D Tetratricopeptide repeat domain 47 144 IPR011990 GO:0005515
Vimu6g02146 459 ProSiteProfiles TPR repeat profile. 59 92 IPR019734 GO:0005515
Vimu6g02146 459 SMART tpr_5 96 129 IPR019734 GO:0005515
Vimu6g02146 459 SMART tpr_5 59 92 IPR019734 GO:0005515
Vimu6g02146 459 SUPERFAMILY TPR-like 57 125 IPR011990 GO:0005515
Vimu6g02146 459 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 40 414 - -
Vimu6g02146 459 Pfam Tetratricopeptide repeat 59 91 IPR013105 -
Vimu6g02146 459 Pfam Low psii accumulation1 / Rep27 167 244 IPR021883 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02146 - - gmx:100784188 785.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02146 6 18931168 18935365 Vimu6g02146 6 18931168 18935365 ECH