Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02140 TTGACTTGTCCTGAGGTTACGGGTTTCTGGATTCACGACAACAATTGCGCTAACGATGATCCGAAATTGGTGTGTCCATATCTGTCTCTGGATTTCAAATTGCATTCATTTTCCATTCTGAATTTATCTTTTTGCATTAACATGTTAGAAAAGTGTTTGGGAGCTCAAAGGGCGCGAAGATTCCAGAGAGCTCTCAGGCATTGCAAGGTCACCATCCTCTGCCTGCTCCTCACCATCGTTGTCCTCCGCGGCACCATCGGTGCTGGAAAATTCGGCACGCCGGAGCAGGATTTCATCGACATTCGCAACCGTTTCTACTCCCGCAAGCTCCCTGAGAATGACCGCCACCTCGGCGAGCTTCAATCCACAACGTCCAATGATTCCAATTCCACCACCGACTACAATGCCTTTGACATCAACACCATATTGGTCGACGAACCAGAAGACGTGAACCGCGAGAAATTGAATCCGGAAGAGCCGTATCGTCTCGGCCCCAAAATATCGACCTGGGACGAGCAACGATCTCGCTGGCTTCGCAATAACCCCAATTTATCTAATTTCGTTCTGCCCAACAAGCCTCGTGTGCTTCTGGTAACTGGGTCATCGCCGAAACCCTGCGAGAATCCCGTTGGGGATCATTACTTGTTGAAGTCAATTAAGAACAAAATTGACTATTGTCGTTTGCATGGGATTGAGGTGTTTTACAACATGGCTCTCCTTGACGCTGAGATGGCAGGGTTCTGGACCAAGCTTCCTTTGATTCGGAAGCTTCTTTTGTCTCACCCTGAGGTGGAGTTTATATGGTGGATGGATAGTGATGCCATGTTCACGGACATGGCGTTTGAGGTGCCGTGGGAGAGGTACAAAGATCATAACTTGGTGATGCATGGATGGGATGAAATGGTTTATGATGAGAAGAATTGGATTGGGCTGAACACTGGGAGTTTTCTGCTGAGAAATTGTCAGTGGTCTTTGGATATTCTCGATGCTTGGGCTCCAATGGGGCCTAAAGGGAGGGTTAGGGATGAGGCTGGGAAAGTGCTGACGCGTGAGCTCAAGGATAGACCTGTTTTCGAAGCTGATGATCAATCTGCCATGGTTTATCTGTTGGCTAAGGATAGGGAGAAATGGGGTGATAAAGTTTATCTTGAGAACGATTATTACTTACATGGTTATTGGGGGATTTTGGTTGATAAGTACGAGGAAATGATTGAGAATTACCATCCTGGTCTCGGGGATCATAGGTGGCCATTGGTGACTCATTTTGTGGGGTGCAAGCCTTGTGGGAAGTTTGGGGATTACCCTGTTGAAAGGTGCTTGAAGCAGATGGATAGGGCCTTCAATTTTGGGGATAATCAGATTTTGCAGATTTATGGATTTACGCATAAGTCGTTGGCTAGTAAAGAAGTTAAGAGAATACGGGAGGAGACTAGCAATCCCCTTGAAGACAAGGATGAACTTGGGTTGCTTCATCCAAACATTTAA 1485 0.4667 MTCPEVTGFWIHDNNCANDDPKLVCPYLSLDFKLHSFSILNLSFCINMLEKCLGAQRARRFQRALRHCKVTILCLLLTIVVLRGTIGAGKFGTPEQDFIDIRNRFYSRKLPENDRHLGELQSTTSNDSNSTTDYNAFDINTILVDEPEDVNREKLNPEEPYRLGPKISTWDEQRSRWLRNNPNLSNFVLPNKPRVLLVTGSSPKPCENPVGDHYLLKSIKNKIDYCRLHGIEVFYNMALLDAEMAGFWTKLPLIRKLLLSHPEVEFIWWMDSDAMFTDMAFEVPWERYKDHNLVMHGWDEMVYDEKNWIGLNTGSFLLRNCQWSLDILDAWAPMGPKGRVRDEAGKVLTRELKDRPVFEADDQSAMVYLLAKDREKWGDKVYLENDYYLHGYWGILVDKYEEMIENYHPGLGDHRWPLVTHFVGCKPCGKFGDYPVERCLKQMDRAFNFGDNQILQIYGFTHKSLASKEVKRIREETSNPLEDKDELGLLHPNI 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02140 494 Pfam galactosyl transferase GMA12/MNN10 family 192 431 IPR008630 GO:0016020|GO:0016757
Vimu6g02140 494 FunFam xyloglucan 6-xylosyltransferase 2 191 342 - -
Vimu6g02140 494 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 191 343 IPR029044 -
Vimu6g02140 494 PANTHER XYLOGLUCAN 6-XYLOSYLTRANSFERASE 5-RELATED-RELATED 51 486 IPR008630 GO:0016020|GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02140 Vimu-Chr6 18914402 18916223 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02140 48 492 Glycosyltransferase AT4G02500 79.425 0.0 726
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02140 K08238 - gmx:100794266 815.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02140 6 18914402 18916223 Vimu6g02140 6 18914402 18916223 ECH