Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02138 ATGCGTGCCACATATGTGGATAACTTAGAATCTTTTGTTGGACAAAGCAGGTATGCAAATTTTTTCCCATGTGTTGGAACTCGCTCAGTGGCAGATTTTGGACTAGCAACCTACATTAAGGAGCCTGTTCAAAGTTATACAATCAAAGTTTCTACAGTGAATGGCCATGAGCACTTTGGAGCAACAGCTGAGGAGAGAAACAATAGAGGTCACTGCTTTATGTCCAGGAATGTTAGGAAAATAATTGGGGCTACTGTCATTATTGCATTAGTGGTTGGTAAGGCAGCTATAGAGGGTCAAAGCTTGAGCATTTCTAATCATGTTAAACATGCCTTGAAGGTTCTCCAAAAATTTGTTGGGCAGGATTCAGTTCCAGAACAGGTTGCCTATGTGATGACTGATTGGGTAGCCTACAAAGAGCAACTAGATACTGTTGGTGGTGCAATTATGAGTGAACTAAGAGAAGCCGTTAGCATAATTGATGTTTTGAGCATTGGAAAGGATTATATGGCGGAAGTAGAAGCATTGGAAGCTACACGGGGACAGTCAAACACCGGAAAGGATGAAGGGAGGGATATAATAAAGAGACTTGATGCAGGAACTAAGATAATGGATGAGTCGCATGATCAGGACACCACAGATTTACACAAATGTGTCACATACTTACGTGACCTCACCCCAAAGATTGATGGATCAGAGCAATGCATTCTAGTTGCTGGAGCACTTGGTGGGAGATTCGACCATGAGATTGGAAATATTAATGTTCTATGTCGATTTCCCAACACACGGATTATCCTTCTATCTGATGATTGCCTCATTCATCTTCTTCCAAAGAATCGGTATCATAAAATCTTTATTCAATCTTCTGTTGAGGGTCCCCATTGTGGACTCATTCCAATTGGGGTGCCGTCTGGAAGCTCTACAACCACAGGACTCAAATGGGACCTCAAGGAGACGGCAATGAGATTTGGAGGTTTAATAAGCACATCGAATATTGTAAAAGGCGAAATAGTTACAGTACAGTCTGATTCGGATCTTCTTTGGACTATTTCTATCAAGAAGCTTTAG 1068 0.4148 MRATYVDNLESFVGQSRYANFFPCVGTRSVADFGLATYIKEPVQSYTIKVSTVNGHEHFGATAEERNNRGHCFMSRNVRKIIGATVIIALVVGKAAIEGQSLSISNHVKHALKVLQKFVGQDSVPEQVAYVMTDWVAYKEQLDTVGGAIMSELREAVSIIDVLSIGKDYMAEVEALEATRGQSNTGKDEGRDIIKRLDAGTKIMDESHDQDTTDLHKCVTYLRDLTPKIDGSEQCILVAGALGGRFDHEIGNINVLCRFPNTRIILLSDDCLIHLLPKNRYHKIFIQSSVEGPHCGLIPIGVPSGSSTTTGLKWDLKETAMRFGGLISTSNIVKGEIVTVQSDSDLLWTISIKKL 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02138 355 Pfam Flavin containing amine oxidoreductase 61 137 IPR002937 GO:0016491
Vimu6g02138 355 CDD TPK 198 350 IPR007371 GO:0004788|GO:0005524|GO:0009229
Vimu6g02138 355 Gene3D - 44 139 - -
Vimu6g02138 355 NCBIfam thiamine diphosphokinase 198 350 IPR006282 GO:0004788|GO:0006772
Vimu6g02138 355 PANTHER THIAMIN PYROPHOSPHOKINASE 191 353 - -
Vimu6g02138 355 Pfam Thiamin pyrophosphokinase, vitamin B1 binding domain 282 347 IPR007373 GO:0009229|GO:0030975
Vimu6g02138 355 SUPERFAMILY Thiamin pyrophosphokinase, catalytic domain 200 269 IPR036759 GO:0004788|GO:0005524|GO:0009229
Vimu6g02138 355 SUPERFAMILY Thiamin pyrophosphokinase, substrate-binding domain 274 354 IPR036371 GO:0009229
Vimu6g02138 355 Gene3D Thiamin pyrophosphokinase, catalytic domain 177 354 IPR036759 GO:0004788|GO:0005524|GO:0009229
Vimu6g02138 355 SUPERFAMILY FAD-linked reductases, C-terminal domain 66 136 - -
Vimu6g02138 355 Pfam Thiamin pyrophosphokinase, catalytic domain 181 263 IPR007371 GO:0004788|GO:0005524|GO:0009229
Vimu6g02138 355 SMART TPK_B1_binding_a_2_a 282 346 IPR007373 GO:0009229|GO:0030975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02138 Vimu-Chr6 18904952 18907445 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02138 K00949 - gmx:100795320 294.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02138 6 18904952 18907445 Vimu6g02138 6 18904952 18907445 ECH