Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02125 ATGAGTAGACGCTCGAGCAGAACTGTCTACGTTGGGAACCTTCCTGGTGACATCCGTGAAAGAGAAGTTGAAGATTTATTTCTGAAGTCCCTGAGATTGTATGCTTTGATTTCGAGAGCCGTCATTTTGGTCCTTGATGCTGTGTGTCTGGTGCCATTAGCTACTCTCGTGTTGCCAGGTTTCCATGTTCAATTCCCCTATGGTCACATAACTCACATAGATCTAAAGGTTCCCCCAAGACCCCCTGGTTACGCATTTGTTGAGTTTGAAGATGCTCAAGATGCTGAGGATGCAATACGTGGACGTGATGGCTATGATTTTGATGGGCACCGGTGGAGCCTGCCCATGGTGGACGTGGTCATTCATCCTCAAGAGATCGACACAGCAGTCACAGCAATGGACGGGCTGGACGTGGGGTATCCAGACGCTCTGAATATCGGGGGAAGCCCTGCCTGTGGCACTCCAAGGGGTGCAATGGGTATATGGTTGGATTCTTGGCCATCTGCCTCACTGGATTGCCCTCTTCAGCATCCTGGCAGGATCTTAAGGTCTTTCATGATGGAAGGGGTATGTGACACTTGGATGAAGTTTCTGGTTCATAATTGTGCTAGATGGTTTGGATGTATTGGTACTACTGGTATTGTGGATTACACAAATTATGATGATATGAAATATGCTATCAAGAAGCTTGATGACTCCGAGTTTCGGAATGCATTTTCCAAGGGTTATGTTCGAGTATGGCATGGATTTGACGTTTTGCGGGATTCATCTAGAAGTCCTAGCCGTGGCCCATCTCATTCTAGAGGAAGAAGCTATAGCCGCAGCCGTAGCCGAAGCCGTAGTTACAGTCGGGACCGGAGCCAAAGCAAATCTCCTAAGGGTAAATCTTCACAGCGTTCACCACCTGCTAAATCTCCATCAAGATCTCCTGCTGCCCGATCTCGCTCAAGATCAAGGTCTCGTTCGTTGTCAGGTATGGTTGGCCGACTTGATGACTTTACTGATGTGTTTAGAGTTTCATAG 1023 0.478 MSRRSSRTVYVGNLPGDIREREVEDLFLKSLRLYALISRAVILVLDAVCLVPLATLVLPGFHVQFPYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYDFDGHRWSLPMVDVVIHPQEIDTAVTAMDGLDVGYPDALNIGGSPACGTPRGAMGIWLDSWPSASLDCPLQHPGRILRSFMMEGVCDTWMKFLVHNCARWFGCIGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSKGYVRVWHGFDVLRDSSRSPSRGPSHSRGRSYSRSRSRSRSYSRDRSQSKSPKGKSSQRSPPAKSPSRSPAARSRSRSRSRSLSGMVGRLDDFTDVFRVS 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02125 340 SMART rrm1_1 8 115 IPR000504 GO:0003723
Vimu6g02125 340 SUPERFAMILY RNA-binding domain, RBD 3 112 IPR035979 GO:0003676
Vimu6g02125 340 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 119 IPR000504 GO:0003723
Vimu6g02125 340 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 5 111 - -
Vimu6g02125 340 MobiDBLite consensus disorder prediction 256 340 - -
Vimu6g02125 340 MobiDBLite consensus disorder prediction 278 292 - -
Vimu6g02125 340 Gene3D - 182 248 IPR012677 -
Vimu6g02125 340 Gene3D - 2 138 IPR012677 -
Vimu6g02125 340 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 112 IPR000504 GO:0003723
Vimu6g02125 340 MobiDBLite consensus disorder prediction 293 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02125 Vimu-Chr6 18837156 18839967 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02125 K12890 - gmx:100796900 197.978