Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02122 ATGGCTTCGGGATTGGTTTTCCGAGGGCACGAGGCCCAACTTGTCAACGACGTCTATTCCGCCAAGCCGCAGAAGCCATGGTTCTCCCTCCGCTACATCTTCCGCGAGCAGCGACTCCATTTCCTCTTCTTCGGCATTCTCCTCGCCTCCGTCTTCTTCCTCCTCTTCCCCTCCGTCTCTTCTCCTCCCGCCCAGGCCCACGACCCACTCCCCGCTTCTTTCTCCGGCCGCCACGACTTAACGCACTGGATCACTACCAACACCCGAGCTTATGACGTGGCGGTGCATTCCTCGGGGAGGATCCCTCTAGGGATTAAACGCAAAGCTCGCCGGGTGGTGGTGACTGGCGGGGCCGGGTTCGTCGGGTCCCACTTAGTGGATCGGTTGATTAGCCGAGGAGACAGCGTGATCGTGGTCGACAATTTCTTCACAGGAAGGAAAGAAAACGTGATGCACCATTTTGGGAATCCGAATTTCGAACTTATCCGACACGACGTCGTTGAGCCTCTCCTCTTGGAAGTAGACCAGATCTACCATCTCGCTTGCCCTGCCTCCCCTGTCCATTACAAGTTCAACCCCGTCAAGACTATTATATCCTTTCGTTTCCTTCTCTTTTATTCTCTTAATTGCATTCTATTCGTCTTGATTACTGCCATTATTACGTTTAACAACTGCTTAATTTCTTCTCCCATGAAAATGTCCAAAGTTCTATCTACCGAAAGAACAGATTTAAATAATAAAATCACTTTGGTCCACGTTGAATTGGATTTGGAAAATGGAATCCTTAATGGGGGTAGTGTTGCTCACAAGACCAACGTGGTGGGCACGTTGAACATGCTGGGGCTGGCTAAAAGGGTTGGCGCGAGGTTCCTGTTAACCAGTACCAGCGAGGTTTACGGAGATCCTCTGCAGCACCCTCAGAAGGAGACTTATTGGGGCAACGTCAATCCCATTGGTGTTCGAAGCTGCTACGACGAGGGAAAGCGTACGGCTGAAACGTTAACCATGGATTACCACAGAGGAGCTGGAGTCGAGGTAAGAATAGCTAGGATTTTCAACACCTACGGGCCCAGAATGTGCTTAGACGATGGTCGCGTTGTTAGTAACTTCGTAGCTCAGGCACTAAGAAAGGAGGCTTTGACCGTTTATGGGGATGGGAAGCAAACAAGAAGTTTCCAATACGTTTCTGATCTGGTGGAGGGGCTGATGCGCCTTATGGAAGGAGAACATCTAGGACCTTTCAATCTTGGAAATCCTGGTGAATTTACCATGCTTGAACTTGCCAAGGTGGTTCAAGAAACAATAGATCCAGAGGCTAAGATAGACTACAGGCCGAACACAGAGGATGACCCACACATGAGAAAGCCTGATATCAGTAGGGCCAAAGAGCTACTGGGCTGGGAACCCAAGGTGGACCTACGCAAGGGACTCCCTCTAATGGTTTCTGACTTCCGACAACGCATTTTTGGGGACCAAAAGGAAGGAGCAACCTCTACCTAA 1500 0.5027 MASGLVFRGHEAQLVNDVYSAKPQKPWFSLRYIFREQRLHFLFFGILLASVFFLLFPSVSSPPAQAHDPLPASFSGRHDLTHWITTNTRAYDVAVHSSGRIPLGIKRKARRVVVTGGAGFVGSHLVDRLISRGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPASPVHYKFNPVKTIISFRFLLFYSLNCILFVLITAIITFNNCLISSPMKMSKVLSTERTDLNNKITLVHVELDLENGILNGGSVAHKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQALRKEALTVYGDGKQTRSFQYVSDLVEGLMRLMEGEHLGPFNLGNPGEFTMLELAKVVQETIDPEAKIDYRPNTEDDPHMRKPDISRAKELLGWEPKVDLRKGLPLMVSDFRQRIFGDQKEGATST 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02122 499 Gene3D - 106 205 - -
Vimu6g02122 499 Gene3D - 263 491 - -
Vimu6g02122 499 FunFam UDP-glucuronic acid decarboxylase 1 304 489 - -
Vimu6g02122 499 Pfam GDP-mannose 4,6 dehydratase 269 478 IPR016040 -
Vimu6g02122 499 Pfam GDP-mannose 4,6 dehydratase 114 196 IPR016040 -
Vimu6g02122 499 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 22 492 IPR044516 GO:0042732|GO:0048040|GO:0070403
Vimu6g02122 499 CDD UGD_SDR_e 110 485 - -
Vimu6g02122 499 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 110 488 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02122 Vimu-Chr6 18815277 18819905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02122 263 481 Miscellaneous Gene Families AT1G02000 25.417 1.39e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02122 K08678 - gmx:100809832 456.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02122 6 18815277 18819905 Vimu6g02122 6 18815277 18819905 ECH