Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02115 ATGGAGAAAATAGAGCACACAATGGTCAGTACCAATGGAATAAATATGCACGTCGCATCAATTGGGTCAGGCCCTGTGGTTCTGTTCCTCCACGGCTTCCCGGAACTATGGTACTCCTGGCGCCACCAGCTTCTGTCGCTCTCCGCCGTGGGCTACCGAGCAATCGCCCCCGACCTCCGCGGCTACGGCGACACCGACGCCCCGCCCTCCGCTTCTTCTTACTCCGCTCTCCACATCGTGGCCGACCTCGTTGGGCTTCTCGATGCTCTGGGCATCGACCAAGTGTTTTTGGTGGGTCATGACTGGGGGGCTTCCGTAGCCTGGTATTTCTGCTTGTTGAGGCCCGATCGTGTGAAAGCCCTAGTCAACATGAGTGTCGTGTTCCGCCCCAGGAACCCTAAACGAAAGCCCATTCAGAGCTTAAGGGCCATGTTGGGCGATGATTACTATATCTGCAGGTTTCAGAAACCTGGGGAGGTTGAAGAGGAATTTGCTCGTGCTGGTGCTGCGAGGATAATAAAGAATTTTCTTGTTTCGCGTGATCCACGTCCACCCAGTGTACCTAAAGAGATAGGATTTGGTGGTTCACCTGACATTCATGTTGCTCTACCATCGTGGCTGACTGAAGAAGACGTCAATTATTATGCCAGCAAATTTGAACAGAAAGGCTTCACTGGTGGGCTCAACTACTATCGCGCCATGGACCTAACCTGGGAGCTCACGGCAGCATGGACTAGAGTACCGATTAAGGTACCGGTAAAGTTTATTGTGGGAGACCTTGACATTACATATAACACTCCAGTTCGCAGAGCTTTTGTTAAGGAATCTGTTTGGAATATTGCGAAGGGATGTTCTCGTGTCCAAAAGCATACAACAGAGAACAAAAATGTGCCTCAATGA 900 0.51 MEKIEHTMVSTNGINMHVASIGSGPVVLFLHGFPELWYSWRHQLLSLSAVGYRAIAPDLRGYGDTDAPPSASSYSALHIVADLVGLLDALGIDQVFLVGHDWGASVAWYFCLLRPDRVKALVNMSVVFRPRNPKRKPIQSLRAMLGDDYYICRFQKPGEVEEEFARAGAARIIKNFLVSRDPRPPSVPKEIGFGGSPDIHVALPSWLTEEDVNYYASKFEQKGFTGGLNYYRAMDLTWELTAAWTRVPIKVPVKFIVGDLDITYNTPVRRAFVKESVWNIAKGCSRVQKHTTENKNVPQ 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02115 299 PRINTS Alpha/beta hydrolase fold signature 51 66 IPR000073 -
Vimu6g02115 299 PRINTS Alpha/beta hydrolase fold signature 97 110 IPR000073 -
Vimu6g02115 299 PRINTS Alpha/beta hydrolase fold signature 111 124 IPR000073 -
Vimu6g02115 299 Pfam alpha/beta hydrolase fold 25 131 IPR000073 -
Vimu6g02115 299 SUPERFAMILY alpha/beta-Hydrolases 2 269 IPR029058 -
Vimu6g02115 299 FunFam Epoxide hydrolase 2 294 - -
Vimu6g02115 299 PRINTS Epoxide hydrolase signature 251 267 IPR000639 GO:0003824
Vimu6g02115 299 PRINTS Epoxide hydrolase signature 97 110 IPR000639 GO:0003824
Vimu6g02115 299 PRINTS Epoxide hydrolase signature 111 124 IPR000639 GO:0003824
Vimu6g02115 299 PRINTS Epoxide hydrolase signature 51 66 IPR000639 GO:0003824
Vimu6g02115 299 PRINTS Epoxide hydrolase signature 31 49 IPR000639 GO:0003824
Vimu6g02115 299 PANTHER EPOXIDE HYDROLASE 5 279 - -
Vimu6g02115 299 Gene3D alpha/beta hydrolase 1 293 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02115 Vimu-Chr6 18759786 18761869 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02115 1 275 Acyl Lipid Metabolism Gene Families AT4G02340 70.545 9.11e-153 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02115 - - gmx:100799903 514.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02115 6 18759786 18761869 Vimu6g02115 6 18759786 18761869 ECH