Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02101 ATGTTGGAGCGAGAAGATGAAAGAGAAAGGGTTAAGGGGAATGAGGGAGGTGAGCAAGGGTTTGGTGCTGCAGTTTCTTTAGAATGCGTAAATGCCTGCAAGCTGTGGAGAGGGGACGGAAGCGGAAAATTCGACTGTAGTCTTCTTTCCTGCGCGTGGAAAGCTCCAAGGTTTCTCACTGGCTTTCTTGCGAGCACTGCTCATCCTCCTCACCAGTGTTCGGACTTGTACAACGGACGTAATGGACGAAGGAACCGGTATAATTTTGGATGTGAAGCTTTTAGTGTAGGTGGTTCTTGTTCCGATGAACCACTTGATATTGTACTTTTTGAAGGATTGTCTAGGTCAAACATGTCTCAAGTTGCTCCCAGAAGAGGGCAATTATGTTGTTCTTCAGCCTTCCCTTCCAACACCGCCACTGACTTTTCCCCAAAAAGTTTGTGGGAGGATCTTAAACCTGCTATTTCGTACCTGTCTTCAAAAGAACTGGAGTTAGTCCACAATGCTTTTATGTTGGCGTTTAAAGCTCACGATGGTCAGAAAAGACGCAGCGGTGAACCCTTCATCATTCACCCAGTTGAGGTTGCACGTATTCTTGGAGAACTTGAACTTGATTGGGAGTCAATTGCTGCCGGATTACTTCATGATACAGTTGAGGATACAAATGTCGTTACTTTTGAGAGGATAGAGGAGGAGTTTGGTGCTACTGTGCGCCACATTGTGGAAGGAGAGACCAAGGTATCAAAACTTGGAAAGTTGAAGTATAAGAATGAAAATGATTCTGTTCAAGATGTGAAAGCAGAAGATCTTCGGCAAATGTTTCTAGCTATGACAGAGGAGGTTCGTGTTATAATTGTCAAATTAGCAGACAGGTTGCATAACATGCGTACACTATCGCATATGCCTCCACATAAACAGGCTAGCATTGCAATGGAGACATTGCAGGTATTTGCTCCTTTAGCGAAGTTGCTTGGGATGTATCAAATTAAGTCAGAACTAGAAAACCTGTCCTTTATGTACACAAATGCGGAAGACTATGCTAAGGTGAAGAGAAGAGTAGCAGAGCTATACAAAGAACATGAGAAAGAACTTCTGGAGCTTCGTATTGTTATTAAACCAAAGCCATGCATTGGGGTTGGGCCTTTGTGCAATCCACAACAGATTTGCTATCATGTTCTGGGGTTGATCCATGGAATCTGGACTCCTATTCCTAGATCTGTGAAGGATTATATTGCAACCCCCAAACCAAATGGCTACCAAAGTCTCCATACCACTGTGATTCCATTTTTGTACGAAAGCATGTTTAGGCTAGAAGTCCAGATTAGAACAGAAGAAATGGATTTGATAGCTGAGAGAGGCATTGCTGCCCATTATAGTGGGAGAGAATTTGTCACTGGCTTGGTTGGAAGTGCTACACCAAGTGGTAAAAGCTCAAGAGGGAAGACGGTTTGTCTTAACAACGCCAACATTGCTCTCAGAATTGGCTGGCTGAATGCAATTAGAGAGTGGCAAGAAGAGTTTGTTGGCAACATGAGTTCTAGGGAATTTGTGGATACTATTACAAGGGATCTGCTGGGTAGTCGTGTCTTTGTGTTCACACCAAGGGGAGAGATTAAGAATCTTCCTCAGGGTGCTAGTGTCATTGATTATGCTTATATGATACACACTGAAATAGGAAACAAGATGGTAGCTGCGAAGGTCAATGGAAATCTTGTTTCTCCCACACATGTACTTGCAAATGCAGAAGTTGTGGAGATAATCACATATAATGCACTTTCCAGCAAATCTGCCTTTCAGAGGCATAAACAATGGTTGCAACATGCTAAAACACGGAGTGCGAGACACAAAATAATGAAGTTTCTAAGGGAACAAGCTGCACGCTCTGCTTCTGATATCACTACTGAAGCAGTCAATGACTTCGTTACTGACTCTGAGGGGGATAGCGAATCTGAAGAACTATCAAAAGGTTCCAGTGGTTCCAAATATCCGTGGGGTAAAACGTTTGTGAATGGGGAGGAAATATCAACGTCAACAAGAAATGAGACTGTCCTCCAAAGTAAGAATGGAAGTGTTTGGATCCCCAAGGTCAACGGGAAACATAATAAGCATGTGCAGCGTGAAAGTTTCAACGGAAAAGGGGAGACGTTACTGCAGGGAAACCTTGTTGCAAAGATGATTCAAGTTAACATTCCAAGATACAAGGAGGTCCTGCCAGGTTTAGAAAGTTGGCAAGCACAGAAAATTGCTTCCTGGCACAATATGGAAGGGCACTCCATCCAGTGGTTATCTGTAGTGAAACGCATTGGGTCAGAATTTGGCTTAGAGATGGGGGATGGCATGATGGCTGAGGTCACTACAGTATTGTCCACTGCAGGCATAGCCATATGTTCTTGTGTGGCTGAGATTGATGGAGGAAGGGGAATGGCTGTTATGGTATTTCACGTTGAAGGGAATTTAGAAAATTTGCTGGCCGAGCTTAGTGGAAGACCGTGGCGTTCTCGAATGCTAGTTGATTCTACTGCATTGCCTCTTGGAGTCTACTACAGTTTGTCCAACGATTACAGAGACCCAGACCAAGGAATTAAGTTTTGTCCACAGCAACGGTGTCTGTCGTTACAAAATGTCACTTCTCCTGGCCGGAAGACTTCCAATTCTACTTAA 2661 0.4371 MLEREDERERVKGNEGGEQGFGAAVSLECVNACKLWRGDGSGKFDCSLLSCAWKAPRFLTGFLASTAHPPHQCSDLYNGRNGRRNRYNFGCEAFSVGGSCSDEPLDIVLFEGLSRSNMSQVAPRRGQLCCSSAFPSNTATDFSPKSLWEDLKPAISYLSSKELELVHNAFMLAFKAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRHIVEGETKVSKLGKLKYKNENDSVQDVKAEDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQASIAMETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVAELYKEHEKELLELRIVIKPKPCIGVGPLCNPQQICYHVLGLIHGIWTPIPRSVKDYIATPKPNGYQSLHTTVIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGREFVTGLVGSATPSGKSSRGKTVCLNNANIALRIGWLNAIREWQEEFVGNMSSREFVDTITRDLLGSRVFVFTPRGEIKNLPQGASVIDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLQHAKTRSARHKIMKFLREQAARSASDITTEAVNDFVTDSEGDSESEELSKGSSGSKYPWGKTFVNGEEISTSTRNETVLQSKNGSVWIPKVNGKHNKHVQRESFNGKGETLLQGNLVAKMIQVNIPRYKEVLPGLESWQAQKIASWHNMEGHSIQWLSVVKRIGSEFGLEMGDGMMAEVTTVLSTAGIAICSCVAEIDGGRGMAVMVFHVEGNLENLLAELSGRPWRSRMLVDSTALPLGVYYSLSNDYRDPDQGIKFCPQQRCLSLQNVTSPGRKTSNST 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02101 886 CDD TGS_RSH 530 588 IPR033655 -
Vimu6g02101 886 SUPERFAMILY Nucleotidyltransferase 333 462 IPR043519 -
Vimu6g02101 886 SUPERFAMILY TGS-like 516 588 IPR012676 -
Vimu6g02101 886 Gene3D - 522 597 IPR012675 -
Vimu6g02101 886 Pfam Region found in RelA / SpoT proteins 356 458 IPR007685 GO:0015969
Vimu6g02101 886 CDD HDc 186 317 IPR003607 -
Vimu6g02101 886 Gene3D Hypothetical protein af1432 146 339 - -
Vimu6g02101 886 Pfam HD domain 169 326 - -
Vimu6g02101 886 CDD NT_Rel-Spo_like 346 452 IPR007685 GO:0015969
Vimu6g02101 886 Pfam TGS domain 529 588 IPR004095 -
Vimu6g02101 886 FunFam GTP pyrophosphokinase RelA 147 342 - -
Vimu6g02101 886 FunFam GTP pyrophosphokinase (RelA/SpoT) 521 595 - -
Vimu6g02101 886 SUPERFAMILY HD-domain/PDEase-like 153 341 - -
Vimu6g02101 886 PANTHER GTP DIPHOSPHOKINASE RSH1, CHLOROPLASTIC-RELATED 366 825 - -
Vimu6g02101 886 SMART RelA_SpoT_2 351 464 IPR007685 GO:0015969
Vimu6g02101 886 ProSiteProfiles TGS domain profile. 525 588 IPR004095 -
Vimu6g02101 886 ProSiteProfiles HD domain profile. 188 295 IPR006674 -
Vimu6g02101 886 SMART hd_13 184 304 IPR003607 -
Vimu6g02101 886 Gene3D Beta Polymerase, domain 2 340 446 IPR043519 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02101 Vimu-Chr6 18666572 18675660 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02101 198 460 EF-hand Containing Proteins AT3G17470 26.708 3.00e-27 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02101 K00951 - gmx:100814134 1389.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02101 6 18666572 18675660 Vimu6g02101 6 18666572 18675660 ECH