Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02080 ATGGTCAAAACGGCGTCGTCCCCTTCTTCCTCTCCGGTCACCATAACGGTGTCGTCCGGAGGTAGGCGCAGAAGCATGGGACTAACCAGTCCCGTTCCTCGCGCCTCAGTCTCCACCAACAACCCCACTTCTCCTCTTCGAGCTTCCGGCGGAGGTAGGAGACTTTCCGGCACCAGCACTTCCCAAAGCGGTGGCATCGAAGAAATGAACTCCGAGTACGTGACATACACTGTTCACATTCCCCCGACGCCGGATCGCAAGCCCCTTACAATCTCGCAAGACGGAAAAGGAAGCACGAGTTTCATCTCCGGAACGATCTTCACCGGAGGCTACAACTCCGTGACGCGCGGCCATTCCTCTGTGGAAATTGAAGCGCTGCCGAAATCCGCGTCGGTTTGCGGAATGAAGGGCTGCAACGAGGAACCAATGAAAGGAGGCTTGTGTGATCCATGCGAGTGCGGGTTCAAGCTCTGCAGGGAGTGTTACTTAGAGTGTGGAGGGAACAATGTTGGAGGAAAGTGTCCTGGGTGCAAATTGCCTTATAAGTATGCGAGTGATGATGAAGATGATGAAGAGGGAGAGGGGTCTGAGGCTGAGGATCAGCCTCTGCCTCTGCCTTCCATGGCGGAGGTCAAGTTGGACAAGAGGTTTTCTCTTGTGAAGTCTTTCAAAGCGCAGAATCATCCTCCGGAATTTGACCACACGCGATGGCTGTTTGAGACGAAGGGGACATATGGCTATGGAAACGCTGTGTGGCCTAAAGATGGTTACGGTGCTAACGGGTTTGAACCCCCTCCGGATTTTGGAAAGAAATCGAAAAGACCCTTGACCCGCAAGGTTGGAGTTTCAGCTGCTATTCTCAGTCCTTATAGGATGCTTATTCTTCTGCGTCTTGTTGCTTTGGGTTTATTTCTTACATGGAGGATAAGACACCCAAACCATGAAGCGATGTGGCTGTGGGCAATGTCTATAACTTGTGAGCTATGGTTTGCATTTTCTTGGATTCTTGATCAGCTTCCTAAGCTCTGTCCTGTGAATAGAGTCACTGATCTCTCTGTTCTGAAAGAACAGTTTGAGTCTCCAAACCTGCGGAATCCAAAAGGAAGATCTGATCTACCAGGGATTGATGTGTTTGTTTCCACGGCAGACCCTGAAAAGGAGCCTCCTCTTGTTACTGCCAACACCATTCTCTCCATCCTTGCAGTTGATTATCCGGTGGAGAAGGTTGCCTGTTACTTGTCTGATGATGGTGGAGCTTTGTTGACATTTGAAGCTCTTGCTGAGACTGCTAGTTTTGCAAGAATTTGGGTTCCTTTCTGTCGGAAGCACAATATAGAACCCCGAAATCCTGAAGCTTATTTTGGGCAGAAACGTGATTTTCTCAAGAATAAGGTACGGTTGGACTTTGTGAGAGAGAGGAAAAGGGTAAAGAGGGAATATGATGAATTCAAAGTGAGGATAAACTCCTTGCCAGAGTCCATTAGGAGAAGATCCAACGCTTACAATGCTCATGAGGAGCTACGAGTCAAGAAGAAACAGATGGAAACAGATGCCAGTGTCTCCGAACCCGTCAAGGTTCCTAAAGCTACGTGGATGTCTGATGGTTCTCATTGGCCAGGAACTTGGGCATCAGCGGAACAAGACCATTCAAGGGGGGACCATGCTGGCATAATTCAGGCAATGTTAGCTCCACCAAATGCAGAACCGGAATTTGGTGCAGGAACTGATGGAGATAACTTCATTGATACAACAGATGTTGATATTAGGTTGCCCATGCTTGTTTACGTGTCTCGTGAAAAGAGGCCAGCATATGACCACAACAAGAAAGCAGGGGCAATGAATGCCCTTGTTCGCACCAGTGCCATCATGTCCAATGGTCCATTCATTCTGAATCTTGATTGTGATCATTACATCTACAACTCCTTGGCTCTAAGAGAAGGTATGTGCTTTATGCTTGACAGGGGAGGTGATAGGATATGTTACGTTCAGTTTCCTCAAAGGTTTGAGGGCATTGACCCCAGTGACAGATATGCAAATCACAACACTGTGTTCTTTGATGTGAGCATGAGAGCTCTTGATGGCTTACAAGGCCCCATGTACGTGGGAACAGGCTGCATATTCAGAAGAACAGCTCTGTATGGATTTAGTCCTCCTAGAGCCACAGAACATCGTGGGTGGTTTGGCAAGAGGAAAATTAAGCTATTTCTGAGAAGGCCAAAGGTCTCAAAAAAGGAAGAGGATGAAGTTTCTGTGCCAATAAATAGTGATCACAATGATGATGATGCAGACATAGAGTCCTTGCTTCTTCCCAAAAGATTTGGTAATTCTACTTCTCTTGCTGCATCCATTCCTGTGGCAGAATACCAGGGAAGGCTGCTTCAAGATTTGCAAGGAAAGGGAACACATGGAAGGCCAGTAGGTTCTCTTGCTGTGCCTCGTGAGCCATTGGATGCGGCCACTGTTGCTGAGGCAATAACTGTGATATCCTGTTTCTATGAAGATAAAACTGAATGGGGCAAACGAGTGGGGTGGATATATGGTTCAGTTACAGAAGATGTGGTAACTGGCTACAGAATGCACAACAGAGGGTGGAGATCAGTGTACTGTGTAACCAAAAGAGATGCTTTTAGAGGATCAGCTCCAATCAATTTAACAGACAGGCTCCATCAAGTGCTTCGATGGGCTACAGGTTCCGTTGAAATCTTCTTTTCAGCTAACAATGCATTATTAGCAAGTCCAAGAATGAAGTTCCTGCAGAGGGTGGCATATTTAAATGTAGGAATGTACCCTTTCACCTCAATGTTTTTGATACTGTATTGCTTTCTACCTGCATTGTCTCTATTTTCGGGTCAATTTATAGTCCAATCTCTCAGTGTAACTTTTCTAGTATTCTTGCTGGGTATCACAATCACACTGTGTTTGCTTGCACTGCTGGAAATCAAATGGTCAGGAATCACTCTACATGATTGGTGGAGAAATGAGCAATTCTGGCTAATTGGTGGAACAAGTGCACACGCTGCTGCTGTTTTACAAGGGTTATTGAAGGTAATAGCTGGAGTGGAAATATCATTCACTTTAACTTCAAAATCAGCCACTCCAGAAAATGAAGATGATGAGTTTGCTGACCTCTATGAGGTGAAGTGGAGCTTTCTAATGATCCCTCCCATTACTATTATGATGGTGAACGCTATTGCTATTGCAGTAGGGGTGGCTAGGACCATGTACAGTCCCTTTCCACAATGGAGCAGGCTAGTAGGAGGGGTGTTTTTCAGTTTATGGGTCTTGTGCCATCTTTATCCTTTTGCAAAGGGTCTCATGGGAAGAAGAGGAAAGATTCCTACCATCATTTATGTTTGGTCTGGATTACTCTCCATTATTATTTCTTTGCTCTGGGTATACATAAACCCTCCTTCAGGGATAACAGAAGATTATATGAACTTCAAATTTCCTTGA 3453 0.4596 MVKTASSPSSSPVTITVSSGGRRRSMGLTSPVPRASVSTNNPTSPLRASGGGRRLSGTSTSQSGGIEEMNSEYVTYTVHIPPTPDRKPLTISQDGKGSTSFISGTIFTGGYNSVTRGHSSVEIEALPKSASVCGMKGCNEEPMKGGLCDPCECGFKLCRECYLECGGNNVGGKCPGCKLPYKYASDDEDDEEGEGSEAEDQPLPLPSMAEVKLDKRFSLVKSFKAQNHPPEFDHTRWLFETKGTYGYGNAVWPKDGYGANGFEPPPDFGKKSKRPLTRKVGVSAAILSPYRMLILLRLVALGLFLTWRIRHPNHEAMWLWAMSITCELWFAFSWILDQLPKLCPVNRVTDLSVLKEQFESPNLRNPKGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAVDYPVEKVACYLSDDGGALLTFEALAETASFARIWVPFCRKHNIEPRNPEAYFGQKRDFLKNKVRLDFVRERKRVKREYDEFKVRINSLPESIRRRSNAYNAHEELRVKKKQMETDASVSEPVKVPKATWMSDGSHWPGTWASAEQDHSRGDHAGIIQAMLAPPNAEPEFGAGTDGDNFIDTTDVDIRLPMLVYVSREKRPAYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGIDPSDRYANHNTVFFDVSMRALDGLQGPMYVGTGCIFRRTALYGFSPPRATEHRGWFGKRKIKLFLRRPKVSKKEEDEVSVPINSDHNDDDADIESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGKGTHGRPVGSLAVPREPLDAATVAEAITVISCFYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGSAPINLTDRLHQVLRWATGSVEIFFSANNALLASPRMKFLQRVAYLNVGMYPFTSMFLILYCFLPALSLFSGQFIVQSLSVTFLVFLLGITITLCLLALLEIKWSGITLHDWWRNEQFWLIGGTSAHAAAVLQGLLKVIAGVEISFTLTSKSATPENEDDEFADLYEVKWSFLMIPPITIMMVNAIAIAVGVARTMYSPFPQWSRLVGGVFFSLWVLCHLYPFAKGLMGRRGKIPTIIYVWSGLLSIIISLLWVYINPPSGITEDYMNFKFP 1150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02080 1150 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 583 727 IPR029044 -
Vimu6g02080 1150 MobiDBLite consensus disorder prediction 1 68 - -
Vimu6g02080 1150 FunFam cellulose synthase-like protein D3 580 717 - -
Vimu6g02080 1150 Pfam Cellulose synthase 375 1139 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vimu6g02080 1150 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 273 1120 - -
Vimu6g02080 1150 MobiDBLite consensus disorder prediction 185 205 - -
Vimu6g02080 1150 SUPERFAMILY Nucleotide-diphospho-sugar transferases 390 943 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02080 Vimu-Chr6 18538473 18542556 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02080 76 1150 Glycosyltransferase AT3G03050 67.792 0.0 1519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02080 K00770 - gmx:100804687 2085.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02080 6 18538473 18542556 Vimu6g02080 6 18538473 18542556 ECH