LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu6g02062	ATGGGTCCTTCTCGTCGCAACAGCAATGGTCGATCACCGCTCGTCAATCAACAGCGTCAAATCACTTCGTTCTTCACCAAATCCCCGTCCCCCTCTCCCACCCTCGCCAAAACCAACCAAAAGCCAAACCCTAACCACGTTTCAGATCCTAACCCTAGCCCTAGTTCCACGACTCTCACTCCCTCACCTCTCAATCCCAAGCCGAACAAATCCCTTCTTGTGATCGGCGCTTCCGTTTCTGCACCCTCTGCTTCGTCTTCTCTCTACGGCCAAGAAGTCGTTGGCCGAAGGGTGAAGATTTATTGGCCGTTAGACAAAGCCTGGTACGAAGGTTCCATCAAATCCTTTGATAAAAGCACCTCCAAGCACGTGGTTCGTTACTTAGATGACGAAGAGGAATCGCTCATCCTGGCTGAGGAGAAAATCGAGTGGCTCCACGAGTCCTCTACAAAGAAACTTAAACGCTTGCGTCGCGGATTCCCCGACATCAGGAAGATGGAGATTGATGAGGAAGAATTAAAAGAAGAAAGTAATAAAGGAGAAAAAGAAGAAGAACATGATAATGTTAACGATGATGATGATGATTCCAATGACGAGGATTGGGGGAAGAATGCTGCATCATTGGAGGATGCTGGGGATGGGGAAGAAGATACGGATTTAGAGGACGAGGACGAAGAGGACGAGGCAGGAAGTGCTAAAGGAAAAAAGGTCGAGGCTAAAAAGCGGAAACTAAATGCAACGGATAAACTAGAGCCTGCGAAAAAGAGCAAGAGTGGAGTGGAAGTTTGTAAAGGGAGTTTCAAGCTCTCAGTGTTGGAGCCTACTAATAATTTAGAGATTAAAAAGACATCTAGTGGCGCTGACAATGTTACATTTACTGAGACCTCTGAAAGATTTGCATCTCGTGAAGCTCAGAAACTTCGCTTCCTGAAAGTAGACCGCAGGGATGCCAAGCGAAGAAGACCAGGGGATGAAAATTATGATTCAAGAACTCTCTACTTACCTCCGGATTTCTTAAAGAATTTGTCAGAGGGTCAGAAACAATGGTGGGAGTTCAAGTCAAAGCATATGGACAAAGTGTTGTTTTTCAAGATGGGTAAATTTTATGAGCTTTTTGAGATGGATGCACATGTAGGAGTTAAAGAGCTTGATTTGCAGTATATGAAGGGAGACCAACCTCATTGTGGATTTCCAGAGAAGAACTTCTCAATGAACGTAGAGAAATTGGCTAGGAAGGGTTATCGAGTTCTTGTTGTGGAGCAGACTGAAACACCTGAACAGCTGGAGCTTCGTCGTAAGGAGAAGGGCTCTAAAGATAAGGTTGTAAGGCGTGAGATATGTGCTGTGGTAACAAAAGGTACATTAACGGACGGGGAGCTGCTGTCTGCTAACCCTGAAGCTGCATATTTAATGGCCATAACTGAGCATCACGAGAAACTTTCAAATGAAATTTCAGAGCGTACCTATGGTGTTTGTATTGTTGATGTTGCCACGAGTAGAGTCATTCTTGGACAGTTTAAGGACGACTTGGACTGCAGTGCCTTGTGCTCTATCTTGTCTGAGATCAGGCCTGTTGAAATTGTTAAACCTGCCAAACAACTCAGTGCTGAAACGGAGAGAGCTCTGCTGAAGCATACCAGAAACCCTTTAGTGAATGAATTAATTCCAGGTGTGGAATTCTGGGATGCTGGCAAAACTCAGGATCAATTGAAGCAAATTTATGGGAACGCTAATGATGTTAGTGTTGAAGATAACGGGTTAGATTGCCTGCCAAATGTTTTACAGGAGCTGGTGAAAACAGGTGACAACAGTATAAGTGCACTTTCAGCACTAGGTGGTGCACTCTATTATCTGAAGCAGGCTTTTCTAGATGAGAGGTTGCTTAGATTTGCACAATTTGAGTTACTTCCGCATTCTGGTTTTGATGATCTTGCTTCAAAACACTACATGGTTCTTGATGTGGCTGCCTTGGAGAATCTTGAGATTTTTGAGAATAGCAGGAATGGAGGTTCTTCTGGCACACTCTATGCGCAACTAAACCAATGTGTTACTGCATTTGGAAAGAGATTGCTAAAGACATGGCTTGCAAGACCGTTATGTAATGTGGAGTCCATTAAGGAACGCCAGGAAGCTGTTGCAGGTTTGAAGGGAGTTAACCTACCATCTGCTCTAGAATTTCGTGGAGCATTATCCAAGCTACCTGACATGGAGCGATTGCTTGCTCGCATATTTTGCTCTAGTGAAGCTAGTGGAAGGAATGCTAATAAAGTTATTCTATACGAGGATGCAGCTAAGAAGCAAGTACAGGAGTTCATTGCAGCTCTCCGTGGCTGTGAACAGATGCTAGAAGCATGCTCTTCGCTTGGTGTCGTTTTGAATGATGTCCAATCTAGACAACTTCATCATCTGTTAACACCGGGTAAAGGTCTTCCTGATGTTCGTATGGAACTTAATCATTTCAAGGATGCTTTTGATTGGGTGGAAGCCAATAGCTCTGGGCGTATAATACCTCATGAAGGAGTCGACACAGAGTATGCCTCAGCCTGTAAGACGGTTAAAGAGATTGAGTCTACTTTGTTGAAGCATCTCAAGAAGCAAAGGGAACTACTTGGAGACACATCAATTGCTTACGTCAATGTTGGAAAGGATGTGTACCTATTGGAAGTGCCAGAAAATTTGTCTAGGAATATTCCTCGGGATTATGAATTGCGTTCGTCCAGGAAAGGTTTCTTTAGGTACTGGACTCCAGATATTAAAATTTATTTAAAAGAACTCTCCCAAGCTGAATTGGAAAAGGAGTCCTTGTTGAAAAATACATTGCAGAGATTGATTGGGCGCTTTTGTGAAAACCACACGGAGTGGAAGCAGTTGGTTTCTGCAACTGCAGAACTGGATCTGTTGATCAGTTTAGCAATAGCCAGTGACTACTATGAAGGACCAACATGCACACCAACTTTCATTGGTGCATTATGTACGAAAGGAGCTCCTTACCTCCATGCTAAAAATTTGGGACACCCTGTCCTCAGGAGTGATACCTTAGGCAGGGGTGCGTTTGTTCCCAATGACATAACCATTGGTGGTTCGGGTCAAGCCAGCTTTATCCTTCTAACAGGTCCTAACATGGGTGGGAAGTCAACTCTTCTTCGTCAGGTTTGCTTGACTGTGATTTTGGCCCAGGTAGGAGCTGATGTTCCAGCAGAAAGCTTTGATTTGTCACCTGTTGATCGGATTTTTGTTCGAATGGGGGCCAAAGATAATATAATGGCTGGCCAAAGTACATTTTTAACTGAGCTTTCAGAAACTGCAACGATGCTGTCATCGGCCACTCGAAACTCGTTGGTGGCTCTGGATGAGCTTGGGCGAGGGACTGCAACTTCTGATGGACAAGCCATTGCGGAATCAGTATTAGAACATTTTGTGCGGAAGGTGCAGTGTCGTGGATTGTTTTCTACCCATTATCATCGATTAGCTGTAGATTATCTCAACGATCCCAAGGTCTGTCTCAGTCACATGGCATGCCAAGTTGGTGATGGAATTGCAGGTTTAGACGAAGTCACCTTTCTTTACAGGCTAACGCCTGGTGCTTGCCCCAAGAGCTATGGTGTTAACGTTGCTCGGATAGCTGGACTTCCAACTTCTGTGCTTCAGAAAGCTGCTTCCAAATCTAGAGAATTTGAGGCCAGTTATGGTAAATGTAGAAAGGTGTCTTCTGAAACAAACTCTCCCAATCAAAACTGGGTTGACGAGATAGCAGCTATCATACGAAAATTGTCCGAAATTGCCACCAATTTGAGTTGCCAGGAAACCATTTGCGTTGGTTCCCTAAGGGAACTTCAGGACAAAGCACGAGAATCGATGATGTTAAACTAA	3870	0.4426	MGPSRRNSNGRSPLVNQQRQITSFFTKSPSPSPTLAKTNQKPNPNHVSDPNPSPSSTTLTPSPLNPKPNKSLLVIGASVSAPSASSSLYGQEVVGRRVKIYWPLDKAWYEGSIKSFDKSTSKHVVRYLDDEEESLILAEEKIEWLHESSTKKLKRLRRGFPDIRKMEIDEEELKEESNKGEKEEEHDNVNDDDDDSNDEDWGKNAASLEDAGDGEEDTDLEDEDEEDEAGSAKGKKVEAKKRKLNATDKLEPAKKSKSGVEVCKGSFKLSVLEPTNNLEIKKTSSGADNVTFTETSERFASREAQKLRFLKVDRRDAKRRRPGDENYDSRTLYLPPDFLKNLSEGQKQWWEFKSKHMDKVLFFKMGKFYELFEMDAHVGVKELDLQYMKGDQPHCGFPEKNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVRREICAVVTKGTLTDGELLSANPEAAYLMAITEHHEKLSNEISERTYGVCIVDVATSRVILGQFKDDLDCSALCSILSEIRPVEIVKPAKQLSAETERALLKHTRNPLVNELIPGVEFWDAGKTQDQLKQIYGNANDVSVEDNGLDCLPNVLQELVKTGDNSISALSALGGALYYLKQAFLDERLLRFAQFELLPHSGFDDLASKHYMVLDVAALENLEIFENSRNGGSSGTLYAQLNQCVTAFGKRLLKTWLARPLCNVESIKERQEAVAGLKGVNLPSALEFRGALSKLPDMERLLARIFCSSEASGRNANKVILYEDAAKKQVQEFIAALRGCEQMLEACSSLGVVLNDVQSRQLHHLLTPGKGLPDVRMELNHFKDAFDWVEANSSGRIIPHEGVDTEYASACKTVKEIESTLLKHLKKQRELLGDTSIAYVNVGKDVYLLEVPENLSRNIPRDYELRSSRKGFFRYWTPDIKIYLKELSQAELEKESLLKNTLQRLIGRFCENHTEWKQLVSATAELDLLISLAIASDYYEGPTCTPTFIGALCTKGAPYLHAKNLGHPVLRSDTLGRGAFVPNDITIGGSGQASFILLTGPNMGGKSTLLRQVCLTVILAQVGADVPAESFDLSPVDRIFVRMGAKDNIMAGQSTFLTELSETATMLSSATRNSLVALDELGRGTATSDGQAIAESVLEHFVRKVQCRGLFSTHYHRLAVDYLNDPKVCLSHMACQVGDGIAGLDEVTFLYRLTPGACPKSYGVNVARIAGLPTSVLQKAASKSREFEASYGKCRKVSSETNSPNQNWVDEIAAIIRKLSEIATNLSCQETICVGSLRELQDKARESMMLN	1289

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vimu6g02062	1289	MobiDBLite	consensus disorder prediction	1	69	-	-
Vimu6g02062	1289	Coils	Coil	918	938	-	-
Vimu6g02062	1289	CDD	Tudor_Agenet_AtEML-like	94	144	-	-
Vimu6g02062	1289	Gene3D	-	650	971	-	-
Vimu6g02062	1289	Pfam	MutS domain I	346	458	IPR007695	GO:0005524\|GO:0006298\|GO:0030983
Vimu6g02062	1289	Pfam	MutS domain III	656	971	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Vimu6g02062	1289	PIRSF	Msh6	2	1269	IPR017261	GO:0006298\|GO:0030983
Vimu6g02062	1289	SUPERFAMILY	DNA repair protein MutS, domain I	331	454	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Vimu6g02062	1289	SMART	TUDOR_7	90	148	IPR002999	-
Vimu6g02062	1289	MobiDBLite	consensus disorder prediction	165	186	-	-
Vimu6g02062	1289	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	995	1226	IPR027417	-
Vimu6g02062	1289	Gene3D	MutS, connector domain	467	648	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Vimu6g02062	1289	SMART	mutATP5	1031	1223	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Vimu6g02062	1289	Gene3D	-	90	144	-	-
Vimu6g02062	1289	SMART	DNAend	670	1011	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Vimu6g02062	1289	Pfam	MutS family domain IV	840	929	IPR007861	GO:0005524\|GO:0006298\|GO:0030983
Vimu6g02062	1289	Gene3D	DNA repair protein MutS, domain I	301	462	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Vimu6g02062	1289	FunFam	DNA mismatch repair protein	300	463	-	-
Vimu6g02062	1289	MobiDBLite	consensus disorder prediction	165	242	-	-
Vimu6g02062	1289	SUPERFAMILY	DNA repair protein MutS, domain III	653	977	IPR036187	-
Vimu6g02062	1289	MobiDBLite	consensus disorder prediction	211	228	-	-
Vimu6g02062	1289	FunFam	DNA mismatch repair protein	816	947	-	-
Vimu6g02062	1289	Coils	Coil	163	183	-	-
Vimu6g02062	1289	FunFam	DNA mismatch repair protein	982	1258	-	-
Vimu6g02062	1289	SUPERFAMILY	DNA repair protein MutS, domain II	464	665	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Vimu6g02062	1289	Gene3D	-	816	947	-	-
Vimu6g02062	1289	Pfam	MutS domain V	1035	1225	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Vimu6g02062	1289	PANTHER	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	346	1238	IPR045076	GO:0005524\|GO:0006298\|GO:0030983\|GO:0140664
Vimu6g02062	1289	Pfam	MutS domain II	469	622	IPR007860	GO:0005524\|GO:0006298\|GO:0030983
Vimu6g02062	1289	MobiDBLite	consensus disorder prediction	1	55	-	-
Vimu6g02062	1289	Gene3D	-	983	1259	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu6g02062	Vimu-Chr6	18428909	18441405	Dispersed/Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu6g02062	K08737		-	gmx:100811104	2038.85

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu6g02062	6	18428909	18441405	Vimu6g02062	6	18428909	18441405	ECH