Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02048 ATGGAGGATTTGGGTGGTACCCGATTTGATGGCCTCAGCAATGCTGTGAGGAGGAAGAGGAGTCAGACTTCTCGCAGGCCGCGGCCTGATTCGCAGCCTGTTTCTGACAGTCATGAACTGTCCCCCTTGTCGTCAACGCCGTCAGAGGATGCTGGCAAGATCTCTAGTGATGAGAATGTTGGCTACGACGCAAATTCCAAGAGAAAGGAGTTCAATCTTAACCATTGTGTCTCTCAAACTTCATCGGTTACTGGAGCTGAAGACGATAAATCTCATAAAAAGAGTAAAAAGGACGGTGGGTTCCAAGCATTTTATAATAATGAACCTGGTCGGAGTGGTTTGCATAATAAACGCTGTAGTGAAGGTGTTCTTGCGCCGGCAAATTGGAGAGGTTCTAGCAAAGCAAAGGATAGCTTGGATTTAGATTCCAGAAATGCAGATTTGTATGCTGCAAAGAATCCTGAGAGTGTGAATTTGGCGCAGTTTGGTGGCTCTCAAGATGGACTGGGGAATGAGAGCCGAGTTAAAAAGGTTAAACTCAAGGTTGGCGGGGTGACACGTACTATTCAAGCCAATTCAGCAACCAATGGTGCTTCAGGAAGCGGATCGACAATGAAGAGCTCTCGTTCATCGGATGCCTCCAGACCGCGCCAAAAACAACAGAGTAATTCAGATGAAAATAACTCTCCTTCTGACAAGAGGAGTGGTCTACAAGGCGTTCCGTGGAAGGATTTCTCAAGGGGTGGTTTTGGTCTTGGAAAGGAGGAATCATTGATGGGAAAGATTTCTGCAAAAAACGCATCTAGTAAGTTGGGCGACAAGTCTGAACCAGTTCGAAAGAGTAAGCGAGTACCAAAGAGACGTGTACTTGATGGGGAATTTGGTGACGATGATGATGAGGATGATGAGATTCGGTACTTGGAAAAGCTGAAAACATCAAAAGTTTCTGCAGTGTATAGAGATGAAGAAGAATTAAGCAAAAAACATCGAAAGCTCTCTAATATGGAAAATGCTGCCTCGACAAGGTCAGGCAAAGATGGTAAGAAAAAGTCTAGATCTGATAGAGTGTACGAGGACACCGATTATGAGGATGAAGAGGAGTCAGGCTCTGAAGGTGAGCTTGAGGATAAGAAAAAGAAAAAACAGAGGAAGGAGTCTGTTGATGTACTGATGGACAGTAAGAGGGAAATTACCCTCACGACTCGTCAACGAGCCCTACAATCAAGCAAAGACGCCTCAGCATCGAGTGCTAGTTTAATTGAGTTTCCCAATGGATTACCACCTGCCCCTCCTAGAAAGCAAAAGGAGAAGCTTTCAGAGGTAGACCAGCAATTGAAGAAAGCCGAAGCTGCACAGAGGCGTAGAATGCAAGTTGAGAAGGCTGCCAGGGAATCTGAGGCTGAGGCTATCAGAAAAATACTTGGTCAAGACTCTAGTAGAAAAAAGCGAGAAGAGAAAATAAAGAAGCGCCAGGAAGAATTGGCACAGGAAAAGGCAGCAAATGCAAGAATGCATGCGTCAAATACCATCAGATACACAATCGGCCCGACTGGAACAGTTGTGACTTTTCCTGAGGAAATGGGGTTGCCTAGCTTATTTAACTCCAAACTTGTCAGTTATCCTCCACCTCGCGAGAAGTGTGCTGGTCCATATTGTTCAAATCCTTATAAGTATCGGGATTCAAAATCAAAACTTCCTCTTTGCAGTCTTCAATGCTACAAGGCTGTCCAGGAGAAGAGGCTTTTGGCTAAGCAACTGGGAGTTGAGAGCGTTTGGTAG 1779 0.4519 MEDLGGTRFDGLSNAVRRKRSQTSRRPRPDSQPVSDSHELSPLSSTPSEDAGKISSDENVGYDANSKRKEFNLNHCVSQTSSVTGAEDDKSHKKSKKDGGFQAFYNNEPGRSGLHNKRCSEGVLAPANWRGSSKAKDSLDLDSRNADLYAAKNPESVNLAQFGGSQDGLGNESRVKKVKLKVGGVTRTIQANSATNGASGSGSTMKSSRSSDASRPRQKQQSNSDENNSPSDKRSGLQGVPWKDFSRGGFGLGKEESLMGKISAKNASSKLGDKSEPVRKSKRVPKRRVLDGEFGDDDDEDDEIRYLEKLKTSKVSAVYRDEEELSKKHRKLSNMENAASTRSGKDGKKKSRSDRVYEDTDYEDEEESGSEGELEDKKKKKQRKESVDVLMDSKREITLTTRQRALQSSKDASASSASLIEFPNGLPPAPPRKQKEKLSEVDQQLKKAEAAQRRRMQVEKAARESEAEAIRKILGQDSSRKKREEKIKKRQEELAQEKAANARMHASNTIRYTIGPTGTVVTFPEEMGLPSLFNSKLVSYPPPREKCAGPYCSNPYKYRDSKSKLPLCSLQCYKAVQEKRLLAKQLGVESVW 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02048 592 MobiDBLite consensus disorder prediction 317 502 - -
Vimu6g02048 592 MobiDBLite consensus disorder prediction 372 399 - -
Vimu6g02048 592 PANTHER INO80 COMPLEX SUBUNIT B 7 580 IPR029523 GO:0006338|GO:0031011
Vimu6g02048 592 MobiDBLite consensus disorder prediction 1 118 - -
Vimu6g02048 592 MobiDBLite consensus disorder prediction 151 303 - -
Vimu6g02048 592 MobiDBLite consensus disorder prediction 433 499 - -
Vimu6g02048 592 MobiDBLite consensus disorder prediction 186 235 - -
Vimu6g02048 592 Pfam HIT zinc finger 543 574 IPR007529 -
Vimu6g02048 592 Coils Coil 441 468 - -
Vimu6g02048 592 MobiDBLite consensus disorder prediction 272 293 - -
Vimu6g02048 592 MobiDBLite consensus disorder prediction 27 53 - -
Vimu6g02048 592 MobiDBLite consensus disorder prediction 71 85 - -
Vimu6g02048 592 Pfam PAPA-1-like conserved region 443 527 IPR006880 GO:0031011
Vimu6g02048 592 Coils Coil 480 500 - -
Vimu6g02048 592 SMART PAPA_1_2 442 527 IPR006880 GO:0031011
Vimu6g02048 592 MobiDBLite consensus disorder prediction 317 335 - -
Vimu6g02048 592 MobiDBLite consensus disorder prediction 342 358 - -
Vimu6g02048 592 MobiDBLite consensus disorder prediction 400 420 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02048 - - gmx:100814323 908.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02048 6 18346329 18349366 Vimu6g02048 6 18346329 18349366 ECH