Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02043 ATGACGATCGGAGATGCTTTTCTATGCTTACTATTCATCGCAACTTGTTGGGTTTCAGTTGCTTCTGCTGATTCCATCTATGGCTGCGGTGGTTTTGTCGAGGCGAGCTCATCGTTGGTAAAATCGAGAAAACAAACTGATACCAAGTTGGACTATTCCGATGTCACGGTTGAGCTTCAAACTGTGGATGGACTGGTAAAGGATAGAACACAATGCGCTCCGAATGGATACTATTTTATTCCAGTATATGACAAGGGTTCCTTTGTAATTAAAATTAATGGACCTCCAGGATGGACATGGGATCCAGAAAAGGTTCCTGTGGTGGTTGACAATAATGGTTGCAATGGTAATGAAGATATAAATTTTCGTTTCACTGGGTTCACTATATCTGGTAGAGTTGTGGGAGCTGTAGGGGGAGAAAGCTGTTCAATAAAAAATGGAGGCCCATCAAATGTAAAAGTTGAACTATTGTCCCTTTCTGGGGATCTGGTCTCTTCCGTCTTAACTTCATCATCAGGGAGTTACTTGTTTACAAACATCATTCCAGGAAAATATACACTACGTGCTTCAAATCCCGATATGGAAGTTGAAGTTAAAGGTTCCACACAGATTGAATTGGGCTTTGGAAATGGGGTAGTTGATGATGTTTTCTTTGTCCCTGGATATAGTATCAGTGGATTTGTTGTTGCTCAGGGAAATCCTATTGTTGGAGTCCATATTTTCTTATATTCAGATGATGTTTCTGAGGTAGAATGTTTGCAAGGCACTGCTACTGGCCCACGACAAGAAAGAGCTCTCTGTCATGCTGCATCAGATGCTGATGGAAAGTTCACATTCAATTCAATACCTTGTGGGAGTTATGAACTTGTTCCATACTATAAGGGTGAAAATACCGTATTTGATGTTTCGCCACCCAGTGTCTCAGTTAATGTCAAGCATCAGCATGTAACAGTGCCTCAAAAGTTTCAGGTAACTGGATTTTCTGTTGGAGGCCGTGTGGTTGATGGAAATGGCATGGGAGTGGAGGGTGTCAAAATCATAGTTGATGGTCATGAAAGGTCTATTACTGATAATCAAGGATATTACAAACTTGATCAGGTTACATCCAAGCACTATACCATAGAAGCCCAAAGGGAGCATTACAAATTCAAGAATTTGGAGAATTATATGGTATTGCCAAATATGGCTTCAATAGAAGACATCAATGCCATTTCATACAATCTCTGTGGTTTGGTTAGGATGGCTGATGGTGGTCTGAAAGCAAAGGTAGCTTTGACTCATGGACCTGATAATGTGAAACCACAAAAGAAGCAAACAGATGAAAATGGAAACTTCTGTTTTGAGGTTCTTCCCGGGGAATATCGTTTGTCAGCCATTGCTGCAACTCCTGAGAATGCTGCTGGACTCATGTTTACTCCATCTTATATCGATGTTGTGGTCAAAAGTCCCCTGTTGAATATTGAATTTTCACAAGCTCTGGTCAATATTCATGGTGCTGTATCCTGCAAGGAGGAATGTGGTCCATTTGTATATGTTACCCTGGTGAGGCAAGTTGAGAAACATAATGGAGAGAGAAAAGCAATTAGCTTGACCACTGAGAGTAGTGAATTTCAGTTTTCAAATGTTATTCCTGGAAAATACAGGCTTGAGGTCAAACACAGTTCCCCTGAATCGGTCACATTGAAAGATAATTGGTGCTGGGAACAGAACTTCATAGATGTAAATGTTGGTGCCGAAGACGTAGAAGGAATCCTTTTTGTTCAAAAAGGCTACTGGGTCAATGTTATCTCGACTCACAATGTTGATGGTTACCTGACTCAACCAGATGGGTCAATTGTGAATTTGAAAATTCAGAAAGGTTCCCAGCATATATGTGTTGAACATCCTGGTGTACATGAATTTAGTTTTGTTGACTCGTGTATCTTCTTTGGGAGTTCATCGGTGAAACTTAATACAGCTACTCAATCGCCTATTCACCTTACTGGAGAAAAGTATCTTCTCAAAGGACAGATAAATGTGCAGTCTGGCTCACTTGATACATTGCCTGAGAACATAGTTGTTGATATTAAACATGACGGAACTGGTGTTATTGATTATACCACAGCCACACTGAAGTCCCATGCGAAAGATCAAACAGAAACTGCTATATTCGAGTATTCTGTTTGGGCCAATCTAGGAGAAAAGCTTACCTTTGTTCCTTGGGACTCTAGGAATGATGGGCAGAAGAAACTTTTATTTTATCCTAGAGAACATCAAGTATCAGTGACAGATGATAATTGTCAAGCTTATATTCCTACATTTTCTTGTGAAGTGGGTGCATATATTGAAGGATCAGTTTCACCTCCTCTTTCTGGCGTCCATATCAGAGTTTTTGCTGCTGGAGACAGCAGCATTACTGCACTTAAAAATGGTGAACTAGTTCTTGAAACAACCACTGATACTGATGGTTCCTATGTGGCAGGACCTCTGCACAATGATATCGGTTACAGTGTCGAGGCTTCAAAGCCTGGATATCATTTAAAACAAGTTGCGCCTCATTCCTTTACTTGTCAGAAGCTTAGTCAAATTTTAGTACACATACATCACAAAGAGGATGCTGAAGAGCCCATTCCTTCTGTTCTGTTATCTTTGAGTGGTGACAATGGTTATAGAAACAACTCGGTGTCAGGGATTGGAGGGACATTCCAGTTTGATAATTTGTTTCCTGGAATGTTCTATTTACGTCCTGTTTTGAAGGAGTATGCTTTCTCACCTCCAGCACAGGCAATAGAGCTTGGAGCAGGGGAGTCCAGAGAAGTTATTTTCCAGGCCACGCGTGTAGCCTACAGTGCTACTGGTGTTGTCACTTTGTTGTCCGGACAACCCAAAGGAGAAGTTTCAGTTGAAGCCCGGTCAGAGTCAAAAGGCTATTTTGAGGAAACAGTGACAGATTCCAATGGAAATTATCGTCTGAGAGGACTACAGCCTGATACTGTCTATGTTGTTAAAGTGGCTAGAAGGGATGCTGTAGCCAGTTCTAATATAGAACGTGCATCTCCAGATTCAATTGCTGTAAAGGTTGGAACCGAAGATATCAAGGGTTTGGATTTTATAGTTTTCGAGGAACCGGAAATGACAATTATAAGTTGCCACGTTGAAGGAAACGGAACAGATGAACTACGTAAACATCTGATGGTAGAAATTAGGTCAGCCAGTGACCTTAACAAGATAGAGTCAGTCTTCCCCCTTCCAATTTCTAACTTCTTCCAAGTGAAGGGCTTATCAAAGGGAAGACACCTTCTACAGCTTCAATCTGGTCTCCCACAAAGCTCGCTTAAGTTTGAATCTGATACCATTGAGGTCGACTTAGAAAAAAATGTTCAAATCCATGTGGGCCCGCTGGTATACAGGATCGAAGATCAACTGAAACAGGAATTGACTCCTGCACCAGTATTCCCTCTTATAGTTGGATTCCTAGTTATTTCACTGTTTATTAGCATGCCAAGATTGAAGGATTTGTATCAAGCCACAGTAGACATACCCACTCCAGGACTAAATGCGGCTTCAAGAAAAGACGTGAAGAAGCCAATGTTGCGAAAGAAGACTTATTAA 3591 0.4105 MTIGDAFLCLLFIATCWVSVASADSIYGCGGFVEASSSLVKSRKQTDTKLDYSDVTVELQTVDGLVKDRTQCAPNGYYFIPVYDKGSFVIKINGPPGWTWDPEKVPVVVDNNGCNGNEDINFRFTGFTISGRVVGAVGGESCSIKNGGPSNVKVELLSLSGDLVSSVLTSSSGSYLFTNIIPGKYTLRASNPDMEVEVKGSTQIELGFGNGVVDDVFFVPGYSISGFVVAQGNPIVGVHIFLYSDDVSEVECLQGTATGPRQERALCHAASDADGKFTFNSIPCGSYELVPYYKGENTVFDVSPPSVSVNVKHQHVTVPQKFQVTGFSVGGRVVDGNGMGVEGVKIIVDGHERSITDNQGYYKLDQVTSKHYTIEAQREHYKFKNLENYMVLPNMASIEDINAISYNLCGLVRMADGGLKAKVALTHGPDNVKPQKKQTDENGNFCFEVLPGEYRLSAIAATPENAAGLMFTPSYIDVVVKSPLLNIEFSQALVNIHGAVSCKEECGPFVYVTLVRQVEKHNGERKAISLTTESSEFQFSNVIPGKYRLEVKHSSPESVTLKDNWCWEQNFIDVNVGAEDVEGILFVQKGYWVNVISTHNVDGYLTQPDGSIVNLKIQKGSQHICVEHPGVHEFSFVDSCIFFGSSSVKLNTATQSPIHLTGEKYLLKGQINVQSGSLDTLPENIVVDIKHDGTGVIDYTTATLKSHAKDQTETAIFEYSVWANLGEKLTFVPWDSRNDGQKKLLFYPREHQVSVTDDNCQAYIPTFSCEVGAYIEGSVSPPLSGVHIRVFAAGDSSITALKNGELVLETTTDTDGSYVAGPLHNDIGYSVEASKPGYHLKQVAPHSFTCQKLSQILVHIHHKEDAEEPIPSVLLSLSGDNGYRNNSVSGIGGTFQFDNLFPGMFYLRPVLKEYAFSPPAQAIELGAGESREVIFQATRVAYSATGVVTLLSGQPKGEVSVEARSESKGYFEETVTDSNGNYRLRGLQPDTVYVVKVARRDAVASSNIERASPDSIAVKVGTEDIKGLDFIVFEEPEMTIISCHVEGNGTDELRKHLMVEIRSASDLNKIESVFPLPISNFFQVKGLSKGRHLLQLQSGLPQSSLKFESDTIEVDLEKNVQIHVGPLVYRIEDQLKQELTPAPVFPLIVGFLVISLFISMPRLKDLYQATVDIPTPGLNAASRKDVKKPMLRKKTY 1196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02043 1196 Gene3D Immunoglobulins 143 216 IPR013783 -
Vimu6g02043 1196 Pfam Carboxypeptidase regulatory-like domain 945 997 - -
Vimu6g02043 1196 FunFam Carbohydrate-binding-like fold 328 402 - -
Vimu6g02043 1196 PANTHER CARBOXYPEPTIDASE REGULATORY REGION-CONTAINING 18 1182 - -
Vimu6g02043 1196 SUPERFAMILY Cna protein B-type domain 146 196 - -
Vimu6g02043 1196 SUPERFAMILY Starch-binding domain-like 942 1002 IPR013784 GO:0030246
Vimu6g02043 1196 SUPERFAMILY Carboxypeptidase regulatory domain-like 327 394 IPR008969 -
Vimu6g02043 1196 Gene3D - 329 406 - -
Vimu6g02043 1196 FunFam Carbohydrate-binding-like fold 143 215 - -
Vimu6g02043 1196 SUPERFAMILY Starch-binding domain-like 218 297 IPR013784 GO:0030246
Vimu6g02043 1196 SUPERFAMILY Cna protein B-type domain 865 922 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02043 K26500 - gmx:100794049 2184.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02043 6 18296039 18311966 Vimu6g02043 6 18296039 18311966 ECH