Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02042 ATGGAAGTGGAATCATCGCTAGCATGCAACAGTGCAACGATTTCTTCTTCCTTGGAACCAAGCAAATTCCCTTTGGAAGAGTTGGTAAGCATTACTCTATTTACTTTGATGAATTTTATTGCTCTATTCACAAGATATGCAAGGAAAATGAAATTAAACGAGTTTTTAAGAGAAAAAAAATTGACTACAGGGGATGACTTTTGGTTCCAAGATCCGAATGGGGACCCAATGGGGGTGTTCTGGTTACAGGGGGTGCACATGATTCACTGTTCCTACAACAGCTTGTGGATGGGACAGATAATTCAACCAGATTGGGACATGTTTCAATCGGATCATGAGTGTGCAAAATTTCATGCTGGTTCAAGGGCCATTTGTGGTGGTCCTGTCTATGTGAGTGATAGTGTTGGCTCTCATGATTTTGATCTCATTAAGAAGCTTGTCTTCCCTGATGGTACCGTTCCCAAATGCATATATTTTCCCCTTCCAACAAGAGACTGCCTTTTCAGGAACCCTCTCTTTGATCAAAATACCGTTCTCAAAATTTGGAACTTCAACAAGTATGGAGGAGTTATTGGTGCTTTCAACTGTCAAGGGGCTGGTTGGGACCCAAAGGAGAAGAAATTCAGGGGTTTCCCAGAGTGTTACAAACCAATATCATGCACTGTTCATGTAACTGAGGTTGAATGGGATCAAAAGAAAGAAGCAGCACATATGGGTAAGGCAGAGGAGTATATTGTGTACCTTAATCAGGCTGAGGTACTACATTTCATGACCCCCGTGTCTGAACCACTGCAATTAACTATTCAACCATCCACTTTTGAACTTTATAACTTTGTCCCAGTTGAAAAGCTAGGTATTAGCAACATAAAATTTGCACCCATTGGGCTAACAAACATGTTCAACAGTGGAGGCACAATTCAAGAATTGGAGTATGTTGAGAAGGATGTTAAAGTTAAGGTTAAGGGTGGTGGGAGATTCCTTGCTTACTCAAGCGAATCTCCAAAGAAGTTCCAACTGAATGGTTCTGATGCTGCTTTCCAGTGGCTGCCTGATGGCAAACTCACTCTCAACCTTGCTTGGATTGAAGAGAATGGCGGGATTTCTGATTTGGCAATTTCTTTTTAG 1125 0.4151 MEVESSLACNSATISSSLEPSKFPLEELVSITLFTLMNFIALFTRYARKMKLNEFLREKKLTTGDDFWFQDPNGDPMGVFWLQGVHMIHCSYNSLWMGQIIQPDWDMFQSDHECAKFHAGSRAICGGPVYVSDSVGSHDFDLIKKLVFPDGTVPKCIYFPLPTRDCLFRNPLFDQNTVLKIWNFNKYGGVIGAFNCQGAGWDPKEKKFRGFPECYKPISCTVHVTEVEWDQKKEAAHMGKAEEYIVYLNQAEVLHFMTPVSEPLQLTIQPSTFELYNFVPVEKLGISNIKFAPIGLTNMFNSGGTIQELEYVEKDVKVKVKGGGRFLAYSSESPKKFQLNGSDAAFQWLPDGKLTLNLAWIEENGGISDLAISF 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02042 374 Pfam Raffinose synthase or seed imbibition protein Sip1 63 357 IPR008811 -
Vimu6g02042 374 PANTHER - 63 366 IPR008811 -
Vimu6g02042 374 SUPERFAMILY (Trans)glycosidases 63 146 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02042 Vimu-Chr6 18285745 18289364 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02042 55 374 Glycoside Hydrolase AT4G01970 58.055 7.28e-140 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02042 K06611 - gmx:100815922 590.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02042 6 18285745 18289364 Vimu6g02042 6 18285745 18289364 ECH