Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02040 ATGGCATTAGCTGCAATCAAAGGACTGAATAGAACCTTCACGATGAGAGGTTGTGATCATCCATTAATTGTTCGTTTTGCGGATCCTAAGAGACCTAGAACAGCAGAGTCCAGGCCACTACCAAATTTTGGTGATCCCAATTGTGGAGGAAGTATGTTGCCTATTGCCCCGCATCATTCCTCAATTGCAAACCCACAAGTTACTACTCATATGCAAAACTGGGAACCTGGTGCTACAGTGGTACAACATTCATTTCCCCCGCAACAATTGCATTCACAGTTGGGATCAATGCCTTTCGGGTCAATTCAAGCTCCAAAATTGCCTTCTCAGACTCAGCCATTTATTACTGAGGTGCAGAGAGAATCACATCCAGCAGATTCATCAGTTCAAAATATAGAGCAGCACCTTAGTTCACAGCTGGCTAGTCAGACTGGAAGCAACCCTAGTACAGCTGCTGGCAATACCCCACCTGCTATGCCTTCTAGTCCCCAAGATGAAGATTTTCCAGAGTGTGACTGGAGTGAACACTACTGCCCCGATGGTGTTAAGTACTACTACAACTGTGTCACTTGTGAAAGCAGATGGGAGAAGCCTGAAGAGTATGCCTTGTACGAGAAAGAATCTCAGAAGCAACCGGAGCTGGAGAATAATTACTGCAGTCTTTCACAATTGTCGTCATGTTCCTCCCTACAAGTTGCTGAAAAATACCAGGAAACAAATCATGACCAGAGACAGTCAAATACAAGTCCTGTTGTTGCACTTGTTTTTGCGGGATGCCGTGGAGTCTCGATTTCGGAGTTTTATGTCCCTATATTGCTTGTTAGTGAGAAGAACGGAAGATTGATTAAAAGCCTAGCAGGGAGCTTGATAAGAAAGGTGGCTCCACTGCCACTGTATGTAGTGCCATGTGCTAAATGGTGTACCCAAATGCCCGTCTCATTCACTTCGTGTTACCTTTCATCGTTGTCCTGGATTCTGTTGACTGTAGAGGTTCCTAGTTCTAATTCGATGCAATGTATTTGCCACTTAATGGAGAGGGAGCGTATAATGGGAAGGAATAGCGGGCCCCCAGTGGCTCTTTGA 1083 0.4515 MALAAIKGLNRTFTMRGCDHPLIVRFADPKRPRTAESRPLPNFGDPNCGGSMLPIAPHHSSIANPQVTTHMQNWEPGATVVQHSFPPQQLHSQLGSMPFGSIQAPKLPSQTQPFITEVQRESHPADSSVQNIEQHLSSQLASQTGSNPSTAAGNTPPAMPSSPQDEDFPECDWSEHYCPDGVKYYYNCVTCESRWEKPEEYALYEKESQKQPELENNYCSLSQLSSCSSLQVAEKYQETNHDQRQSNTSPVVALVFAGCRGVSISEFYVPILLVSEKNGRLIKSLAGSLIRKVAPLPLYVVPCAKWCTQMPVSFTSCYLSSLSWILLTVEVPSSNSMQCICHLMERERIMGRNSGPPVAL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02040 360 CDD WW 171 200 IPR001202 GO:0005515
Vimu6g02040 360 Pfam WW domain 171 198 IPR001202 GO:0005515
Vimu6g02040 360 SUPERFAMILY WW domain 172 204 IPR036020 GO:0005515
Vimu6g02040 360 SMART ww_5 168 200 IPR001202 GO:0005515
Vimu6g02040 360 ProSitePatterns WW/rsp5/WWP domain signature. 173 198 IPR001202 GO:0005515
Vimu6g02040 360 PANTHER TRANSCRIPTION ELONGATION REGULATOR 1 58 219 IPR045148 GO:0003712|GO:0070063
Vimu6g02040 360 Gene3D - 169 213 - -
Vimu6g02040 360 MobiDBLite consensus disorder prediction 118 161 - -
Vimu6g02040 360 MobiDBLite consensus disorder prediction 118 168 - -
Vimu6g02040 360 ProSiteProfiles WW/rsp5/WWP domain profile. 173 200 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02040 Vimu-Chr6 18260476 18264452 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02040 K13207 - gmx:100795107 394.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02040 6 18260476 18264452 Vimu6g02040 6 18260476 18264452 ECH