Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02037 ATGGGTACGGAGAGAAAGAGGAAGGTGAGCTTGTTCGACGTGGTAGATGATTCTCTAGCGAAGAAGGTGAAATCAAATGGCGGTGCCAATAACAGCGTTGCCAATGCTCTCATCAATCGCTGGAACGCAAGGCCTTACTCTCAGAGGTACTTCGATATTTTGGAAAAGAGAAAAACCCTCCCTGTTTGGCACCAGAAAGAAGAGTTCTTACAAGTTCTCAAAGATAACCAGACTTTGATTCTTGTCGGTGAAACTGGTAGTGGCAAAACCACTCAGATTCCTCAGTTTGTTTTGGATGCTGTCGAGTTAGAGACACCGGACAAACGTAAGAAGATGATGATTGCGTGCACTCAGCCTCGGAGAGTGGCTGCGATGTCTGTTTCGCGTCGTGTGGCTGAAGAGATGGATGTAACCATAGGGGAAGAGGTTGGTTACAGTATCAGATTTGAAGACTGCAGTAGTGCGAGGACAGTTTTGAATCTCACAAGTGGATTTCACAGGTATCTAACCGATGGTATGCTCTTAAGGGAAGCAATGACAGATCCGCTTTTGGAACGGTACAAGGTTATTATTCTTGATGAGGCTCACGAGAGGACTTTGGCCACTGATGTGTTATTTGGCCTTCTGAAAGAAGTGCTTAAAAATAGACCTGACTTGAAGTTGGTTGTTATGAGTGCTACTCTTGAAGCTGAAAAATTCCAGGGCTATTTTTTTGGTGCCCCTCTCATGAAAGTTCCTGGAAGGCTACACCCTGTTGAAATTTTCTACACACAGGAACCTGAAAGGGATTACTTGGAGGCTGGCATTAGGACAGTGGTACAAATACACATGTGTGAACCACCTGGAGATATACTTGTATTTCTGACTGGAGAGGAAGAGATAGAAGATGCTTGCCGCAAAATAACAAAAGAAATTTCTAATCTGGGAGATCAGGTGGGCCCTGTGAAAGTGGTACCCCTGTATTCTACCCTTCCTCCAGCTATGCAGCAGAAGATTTTTGAGCCACCACCACCTCCACTGAAGGAGGGTGGAATTCCTGGAAGGAAGATTGTGGTCTCAACAAACATAGCAGAAACTTCGTTGACAATTGATGGTATTGTTTATGTCATTGACCCTGGCTTTGCTAAGCAGAAGGTTTACAATCCACGAGTTCGTGTGGAGTCTTTATTAGTATCACCAATATCGAAAGCTAGTGCACATCAGAGGTCTGGGCGTGCCGGAAGAACTCAACCAGGGAAATGCTTTAGACTTTATACAGAGAGAAGTTTCAATAATGATCTTCAGCCACAGACCTATCCAGAAATTTTAAGATCAAATCTTGCCAATACAGTTCTTACTTTGAAGAAACTGGGCATAGATGATTTAGTGCATTTTGATTTCATGGACCCGCCTGCTCCTGAGACATTAATGCGTGCGTTGGAAGTGTTGAATTACTTGGGTGCACTGGATGATGATGGTAACTTAACTAAGCTGGGTGAGATTATGAGTGAATTTCCCTTGGATCCACAGATGTCGAAGATGCTTGTTGTCAGTCCTGAATTCAACTGTTCAAATGAGATTCTATCAATTTCTGCCATGCTGTCAGATGAGTGTGTCCTATTAGGTTGTCATCAGCAACTGTCTTCTCTGGGTTCCATGCCCCCGGTTGGCATGCACCATAGGATTCTAATACCCAATTGCTTTGTCCGGCCTAGGGAGGCTCAAAAAGCTGCGGATGAAGCTAAAGCTAGGTTTGGGCACATTGATGGAGATCATCTCACGCTGTTGAATGTCTATCACGCATACAAGCAAAATAATGAGGATCCCTCTTGGTGCTATGATAACTTTGTTAATCATAGGGCATTGAAATCAGCTGATAATGTTAGACAACAGTTAGTGCGTATCATGGCCCGGTTTAATCTGAAGCAATGCAGCACTGACTTTAATAGCCGCGACTACTATGTCAACATAAGAAAAGCTATGCTAGCTGGGTATTTCATGCAGGTAGCTCATTTGGAGCGTACAGGACACTACTTGACGGTGAAAGACAACCAGGTGGTGCATTTGCATCCATCTAATTGCCTGGACCACAAGCCTGAATGGGTAATTTATAACGAATATGTTCTTACCAGTCGGAATTTTATTCGTACTGTTACAGACATACGAGGGGAATGGTTGGTTGATGTAGCACCACATTACTATGATTTGTCTAATTTCCCCCAATGTGAGGCAAAGCGTGTTCTAGAGAAACTTTACAAGAAGCGAGAAAAGGAGAAGGAGGAAACCCGGAGTCGCAGATAA 2280 0.4382 MGTERKRKVSLFDVVDDSLAKKVKSNGGANNSVANALINRWNARPYSQRYFDILEKRKTLPVWHQKEEFLQVLKDNQTLILVGETGSGKTTQIPQFVLDAVELETPDKRKKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLNLTSGFHRYLTDGMLLREAMTDPLLERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFFGAPLMKVPGRLHPVEIFYTQEPERDYLEAGIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKITKEISNLGDQVGPVKVVPLYSTLPPAMQQKIFEPPPPPLKEGGIPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTERSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSISAMLSDECVLLGCHQQLSSLGSMPPVGMHHRILIPNCFVRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMARFNLKQCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVIYNEYVLTSRNFIRTVTDIRGEWLVDVAPHYYDLSNFPQCEAKRVLEKLYKKREKEKEETRSRR 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02037 759 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 650 726 IPR011709 -
Vimu6g02037 759 Gene3D - 249 431 IPR027417 -
Vimu6g02037 759 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 70 246 IPR014001 -
Vimu6g02037 759 SMART helicmild6 292 410 IPR001650 -
Vimu6g02037 759 Pfam Helicase associated domain (HA2) 472 588 IPR007502 GO:0004386
Vimu6g02037 759 Gene3D - 10 248 IPR027417 -
Vimu6g02037 759 SMART ultradead3 57 255 IPR014001 -
Vimu6g02037 759 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 433 476 - -
Vimu6g02037 759 Pfam DEAD/DEAH box helicase 66 231 IPR011545 GO:0003676|GO:0005524
Vimu6g02037 759 Pfam Helicase conserved C-terminal domain 277 409 IPR001650 -
Vimu6g02037 759 SMART ha2_5 471 589 IPR007502 GO:0004386
Vimu6g02037 759 CDD DEXHc_DHX15 48 245 IPR044756 GO:0003724|GO:0005524
Vimu6g02037 759 Gene3D - 455 639 - -
Vimu6g02037 759 FunFam Putative pre-mRNA-splicing factor ATP-dependent RNA helicase 14 248 - -
Vimu6g02037 759 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 641 IPR027417 -
Vimu6g02037 759 CDD SF2_C_RHA 250 418 - -
Vimu6g02037 759 PANTHER ATP-DEPENDENT RNA HELICASE 47 731 - -
Vimu6g02037 759 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 455 546 - -
Vimu6g02037 759 Coils Coil 738 758 - -
Vimu6g02037 759 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 271 451 IPR001650 -
Vimu6g02037 759 FunFam Predicted protein 261 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02037 Vimu-Chr6 18233406 18237250 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02037 K12820 - gmx:100807162 1329.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02037 6 18233406 18237250 Vimu6g02037 6 18233406 18237250 ECH