Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02022 ATGACTGGTAGCCAGAGCTACAGTGGCAATGGGGAAACCAAGGGTAAGGTGGCCATTGTCACCGGCGGAGCCACCGGAATAGGAGAGGAAGCAGTGAGGATATTCGTGGAAAACGGAGCATTTGTGGTCATAGCAGACATAAAGGACCAACTGGGTCACAGTTTGGCAACTTCGTTTGGTTCAGACAAAGTGACTTATCGGCACTGTGATGTGAGAGACGAGAATGAAGTTGCAGAAACAGTGGCATTCACAGTAGAGAAATATAACAGCTTAGACATCATGTTCAGCAACGCTGGCATCGCAGGATCTTATTCATCCATACTAGATTTGGATCTCAAAGAATTCGACAACACCATGGCCATTAACGTTCGTGGGGTAGCCGCAACCATCAAGCACGCGGCACGTGTCATGGTTGCTAGAAAAATTCGTGGATCCATAATTTGTACTGCCAGTGTGGCTGCTTCCTTCGCGGGAGGCGCGGGTCACGAGTACACCGTATCAAAACACGGCGTTCTTGGGCTTGTTCGGTCGGCGTGCGGCGAACTTGGAGCTTATGGAATAAGAGTGAATTCCATCTCACCTTATGCACTTGCCACGCCTATGACTTGCGCCGCACTCGATGTGGGACCTGCTGAAGTTGAAGCTGCAGCATATGGTTCTGCGAATTTGGAGGGAATTACGTTGAAGGCTGATCATATTGCGGAAGCTGCTCTGTTTCTTGCTTCTGATGAATCGCTTTATATCAGTGGCCACAACTTGGTCGTCGATGGAGGTTACTCCGCCGTCAATCGCTGGCTTCCTAGGATTCAAAAGTAA 816 0.4939 MTGSQSYSGNGETKGKVAIVTGGATGIGEEAVRIFVENGAFVVIADIKDQLGHSLATSFGSDKVTYRHCDVRDENEVAETVAFTVEKYNSLDIMFSNAGIAGSYSSILDLDLKEFDNTMAINVRGVAATIKHAARVMVARKIRGSIICTASVAASFAGGAGHEYTVSKHGVLGLVRSACGELGAYGIRVNSISPYALATPMTCAALDVGPAEVEAAAYGSANLEGITLKADHIAEAALFLASDESLYISGHNLVVDGGYSAVNRWLPRIQK 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02022 271 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 12 264 - -
Vimu6g02022 271 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 14 262 IPR036291 -
Vimu6g02022 271 PRINTS Glucose/ribitol dehydrogenase family signature 89 100 IPR002347 -
Vimu6g02022 271 PRINTS Glucose/ribitol dehydrogenase family signature 164 183 IPR002347 -
Vimu6g02022 271 PRINTS Glucose/ribitol dehydrogenase family signature 138 154 IPR002347 -
Vimu6g02022 271 PRINTS Glucose/ribitol dehydrogenase family signature 17 34 IPR002347 -
Vimu6g02022 271 PRINTS Glucose/ribitol dehydrogenase family signature 223 243 IPR002347 -
Vimu6g02022 271 PRINTS Glucose/ribitol dehydrogenase family signature 185 202 IPR002347 -
Vimu6g02022 271 Pfam Enoyl-(Acyl carrier protein) reductase 22 260 - -
Vimu6g02022 271 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 151 179 IPR020904 GO:0016491
Vimu6g02022 271 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 89 100 IPR002347 -
Vimu6g02022 271 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 144 152 IPR002347 -
Vimu6g02022 271 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 164 183 IPR002347 -
Vimu6g02022 271 FunFam Short-chain dehydrogenase reductase 6 264 - -
Vimu6g02022 271 Gene3D - 3 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02022 Vimu-Chr6 18087601 18088572 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02022 12 258 Acyl Lipid Metabolism Gene Families AT3G55290 29.502 2.49e-21 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02022 - - gmx:100798299 389.423