Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02021 ATGTCGAAACAAAGGTTGCAGGGTAAAGTGGCCATTGTCACCGGCGGAGCCACCGGAATAGGAGCGGAAGCAGTGAGGATATTCGTGGAAAACGGAACATTTGTGGTCATAGCAGACATAAAGGACGAACTGGGTCACAGTTTGGGAACTTCGTTTGGCTCAGACAAAGTGACTTATCGGCACTGCGACGTGAGAGACGAGAATGAAGTTGAAGAGACAGTAGCTTTCACAGTAGAGAAATATAGCAGCTTAGACATCCTGTTCAGCAACGCTGGCATCGCAGGACCCTATTCATCCTTACTGGATCTGGATCTCAACGAATTCGACAACACCATGGCCATCAACGTCCGTGGGGTAGCCGCAACCATCAAGCACGCGGCACGCGTCATGGTTGCTAAAAAAATCCATGGATCCATAATTTGCACTGCCAGCGTGGCTTCGTCCGTCGGGGGAAGCGCGGGTCATGAGTACACCGTATCCAAACACGGCGTTCTTGGGCTTGTTCGGTCGGCGTGCGGCGAGTTTGGAGCTTATGGAATAAGAGTGAATTCTATCTCGCCTTATGCACTTGCCTCGCCTCTTACTTGCGACGCACTCGATTGGGGACCTGCTGAAGTTGAAGCTGCGCAACATAGTTCTGCGAATTTGGAGGGGATTACGTTGAAGGCTAATCATATTGCTGAAGCTGCTCTGTTTCTTGCTTCTGATGAATCGGTTTATATCAGTGGCCACAACTTGGTCGTCGATGGAGGTTTCACCGCCGTTAATCGTTGGCTTCCTAGGATTCAAAAGCTGCAGGGTAAGGTGGCTATCGTTACCGGTGGAGCTGGCGGAATAGGAGCAGAAGCGGTGAGGATATTCGTCGAAAACGGAGCATCGGTGGTGATAGCAGACATCAAGGACGAATTAGGTCAGACGTATGCAGCTTCATTTGGCTCAGAGAAAGTGAATTACCGCCACTGTGATGTGAGAGACGAGAAGCACGTCGAAGAAACAGTGGCTTTCGCGGTAGAGAAATATGGAAGCTTAGACATCTTGTTCAGCAATGCTGGCGTCGCGGGTCCTTTGTCAAGCATTCTAACCTTCGATCTCACTGAATTTGACAACAGCATGGCCGTGCATCTTCGCGGTGCGGCAGCCTTCATCAAGCACGCGGCACGTGTCATGGTGGAAAGGAAGACACGTGGATCCATAATCTGCACGGCCAGCGTGGCTGGTTCCGTGGCCGGATGCGCGGGTCATGATTACACCGCATCCAAACACGGCCTTGTTGGGCTTGTTAGATCGACGTGCAGCGAGCTTGGAGCTTATGGCATAAGAGTGAATTCCATTTCGCCTTATGCGGTTGCGACGCCTCTTACTTGTGAAGCCTTTGATATGACGGGTGGTGAAATTGAAGCTGCAGGTCACGCTTTAGCGAATTTGCATGGAATCACGTTGAAGGCTAGCCATATTGCAGAAGCTGCTCTGTTTCTTGCTTCTGATGAATCGGCTTATATCAGTGGACACAACTTGGTCGTCGATGGAGGTTTCCTCGTTGTCAATCGCGGTCTTCCAAGCATTAAAAATTAA 1572 0.5045 MSKQRLQGKVAIVTGGATGIGAEAVRIFVENGTFVVIADIKDELGHSLGTSFGSDKVTYRHCDVRDENEVEETVAFTVEKYSSLDILFSNAGIAGPYSSLLDLDLNEFDNTMAINVRGVAATIKHAARVMVAKKIHGSIICTASVASSVGGSAGHEYTVSKHGVLGLVRSACGEFGAYGIRVNSISPYALASPLTCDALDWGPAEVEAAQHSSANLEGITLKANHIAEAALFLASDESVYISGHNLVVDGGFTAVNRWLPRIQKLQGKVAIVTGGAGGIGAEAVRIFVENGASVVIADIKDELGQTYAASFGSEKVNYRHCDVRDEKHVEETVAFAVEKYGSLDILFSNAGVAGPLSSILTFDLTEFDNSMAVHLRGAAAFIKHAARVMVERKTRGSIICTASVAGSVAGCAGHDYTASKHGLVGLVRSTCSELGAYGIRVNSISPYAVATPLTCEAFDMTGGEIEAAGHALANLHGITLKASHIAEAALFLASDESAYISGHNLVVDGGFLVVNRGLPSIKN 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02021 523 PRINTS Glucose/ribitol dehydrogenase family signature 437 454 IPR002347 -
Vimu6g02021 523 PRINTS Glucose/ribitol dehydrogenase family signature 416 435 IPR002347 -
Vimu6g02021 523 PRINTS Glucose/ribitol dehydrogenase family signature 269 286 IPR002347 -
Vimu6g02021 523 PRINTS Glucose/ribitol dehydrogenase family signature 475 495 IPR002347 -
Vimu6g02021 523 PRINTS Glucose/ribitol dehydrogenase family signature 341 352 IPR002347 -
Vimu6g02021 523 PRINTS Glucose/ribitol dehydrogenase family signature 390 406 IPR002347 -
Vimu6g02021 523 FunFam Short-chain dehydrogenase reductase 257 515 - -
Vimu6g02021 523 FunFam Short-chain dehydrogenase reductase 1 256 - -
Vimu6g02021 523 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 341 352 IPR002347 -
Vimu6g02021 523 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 396 404 IPR002347 -
Vimu6g02021 523 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 416 435 IPR002347 -
Vimu6g02021 523 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 403 431 IPR020904 GO:0016491
Vimu6g02021 523 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 2 257 - -
Vimu6g02021 523 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 144 172 IPR020904 GO:0016491
Vimu6g02021 523 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 266 513 IPR036291 -
Vimu6g02021 523 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 255 IPR036291 -
Vimu6g02021 523 Gene3D - 260 519 - -
Vimu6g02021 523 Gene3D - 1 259 - -
Vimu6g02021 523 Pfam Enoyl-(Acyl carrier protein) reductase 15 253 - -
Vimu6g02021 523 Pfam Enoyl-(Acyl carrier protein) reductase 274 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02021 Vimu-Chr6 18077757 18081421 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02021 264 510 Acyl Lipid Metabolism Gene Families AT3G55290 29.615 1.91e-21 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02021 - - gmx:100798299 431.795