Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02020 ATGCCGAAACAAAGGTCCTCCTCCAAGTTGGAGGGTAAGGTGGCTCTTATCACCGGGGCTGCAAGTGGTATCGGAGAAGAGACGGTGAGATTGTTCGCAGAACATGGAGCAGTTATTGTTGCAGCAGATATTCAAGACGAGGAAGGTGAAAAAGTTGCTGCTTCGATAGGGTCAGAGAGAGTGACTTACCACCATTGCGATGTGAGAGATGAAAACCAAGTTGAAGAAACCATAAACTTCACTCTGGAAAAACACGGTCGAATAGATATTCTGTTCAGCAACGCAGGAATAATAGGTTCTCTATCTGGGATCCTTGACCTTGATCTGAATGAGTTTGACAACACCATGGCCACAAACGTTCGCGGTGTAGCCGCCACGATAAAGCACTCGGCACGTGCGATGGTTGCCAAAGGCATCCGTGGATCCATCATATGCACCACCAGTGTGGCTGCCACAGTTGGTGGAACTGGTCCTCATGGCTATACCACATCAAAACATGCTCTTACTGGGTTGGTGAAATCAGCTTGCAGTGAACTCGGTGCGTATGGAATAAGGGTCAACAGCATATCCCCTTTTGGAGTAGCCACCCCTCTTGCATGCAGGGCTTTCAACTTTGAGCCTGAGCAAGTCGAAGCTAATAGCTACTCACAAGCTAACCTCAAGGGTGTGGTATTGAAGGCCAGGCATGTAGCAGAAGCAGCTTTGTTTCTAGCTTCTGATGAAGCACTATACATAAGTGGTCACAACTTGATGGTGGATGGTGGCTTCTCTGTGGTTAACAGAAGTTATTCTTTCACACCAGTTGACGTTTAG 813 0.476 MPKQRSSSKLEGKVALITGAASGIGEETVRLFAEHGAVIVAADIQDEEGEKVAASIGSERVTYHHCDVRDENQVEETINFTLEKHGRIDILFSNAGIIGSLSGILDLDLNEFDNTMATNVRGVAATIKHSARAMVAKGIRGSIICTTSVAATVGGTGPHGYTTSKHALTGLVKSACSELGAYGIRVNSISPFGVATPLACRAFNFEPEQVEANSYSQANLKGVVLKARHVAEAALFLASDEALYISGHNLMVDGGFSVVNRSYSFTPVDV 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02020 270 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 11 259 IPR036291 -
Vimu6g02020 270 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 IPR002347 -
Vimu6g02020 270 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 180 IPR002347 -
Vimu6g02020 270 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 IPR002347 -
Vimu6g02020 270 Gene3D - 2 264 - -
Vimu6g02020 270 PRINTS Glucose/ribitol dehydrogenase family signature 86 97 IPR002347 -
Vimu6g02020 270 PRINTS Glucose/ribitol dehydrogenase family signature 220 240 IPR002347 -
Vimu6g02020 270 PRINTS Glucose/ribitol dehydrogenase family signature 14 31 IPR002347 -
Vimu6g02020 270 PRINTS Glucose/ribitol dehydrogenase family signature 135 151 IPR002347 -
Vimu6g02020 270 PRINTS Glucose/ribitol dehydrogenase family signature 182 199 IPR002347 -
Vimu6g02020 270 PRINTS Glucose/ribitol dehydrogenase family signature 161 180 IPR002347 -
Vimu6g02020 270 FunFam Short-chain dehydrogenase reductase 2 261 - -
Vimu6g02020 270 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 7 262 - -
Vimu6g02020 270 Pfam Enoyl-(Acyl carrier protein) reductase 19 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02020 Vimu-Chr6 18068348 18069274 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02020 3 267 Miscellaneous Gene Families AT2G29150 33.210 5.61e-24 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02020 - - gmx:100777244 476.863