Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02016 ATGCTTAAACCCTACTCCGCCACTGCATCGCTGAAGGAGCAAAATGGATTCGGCGAACGGAGCAATGGCTGTGAGAGACCAAAGCGTAACGGAATGGCGCATGCACCGTGGTCCCTACCTGGGAGACATTTCAGCTCTGTGTTTTCTCCACCTTCCAAATCTCTCTCTCCCTTTTCTGCTCGCGGGTACCGTTTTGCTCTCTCCGCATTGAATTTCACATTGTTTAACCTTCATTTGTTTAACCAAGTGAACCTTCCTTCAGGTTTGGGTTCTGAAATTGCGGTCTATGATTTGGAACTGAGTAAGAGAATAAGGTCCTTCTCCGTATTCGAAGGAGTTCGCGTCCACGGAATCGCTTCTAGTTTCCCTCGCGGGACCATGATTGCTGTGTTTGGGGAAACGAGAGTGAAGCTGTTTAGCTTCGAATTTGATGCCGTTTCTGGGAGCGCAGAGCTGACGCTAGCTCATTTGTTGCCGAAGTTTGGTCACTGGGTTTTGGATGTTTGCTTCCTCGAGGGATGCTTACCTCATTCCAATGTGGAAGGTCATTTTCTTGCTGTGGGATGTAGTGATAATTCAGTTCATGTTTGGGATTTTTCTAACTCCATTGCGGTCCTTAAGGTTCAATCTCCAGTACGGTGCCTTCTGTACTCAATGCGATTATGGGGTCACAATCTTGAAGTCCTCCGAATAGCTTCTGGTACTATATTTAATGAGCTAAAGGATAAACTGTTTGAGGCTACTCATGTATGTAAACTTATTGGACATGAAGGTTCAATCTTCCGAATAGCATGGTCATCTTGTGGATCTAAACTGGTATCTGTCTCGGATGATCGGAGTGCACGTGTTTGGGCTGTTTCTATTGAAGGGGAACATGCATTGTGCCACAATTCCACTCCCCTTGTCTTATTTGGACATAATGCTCGGGTTTGGGACTGCTCTATTTCTGATAATTTGTTTGTCACTGTTAGTGAGGATTGTACATGTCGTATTTGGGGAGTGGACGGTAAACAACTGCAAGTCATTAAGGAGCACATTGGAAGAGGTATATGGAGATGTTTGTATGACCCGAATTCATCACTGCTTATAACTGCTGGGTTTGACTCTGCTATTAAAGTACATAAACCTCATGCATCTCTGCCCATGGGCTTGGAAGCAGTACAAGGATCCCCTTGTAGTACAGAGTTGTTTTCGATTTGCACACCTAATGTGTCAGAGCATATTGGATTTATGGACAGCAAGAGTGAATATGTTCGATGTTTGCGCTTTTCCTGTCAGGATTCTCTTTATGTTGCCACCAATCAGGGTTATCTCTACCATGCTAAATTATGTGATACTGGAGGTGCTCAGTGGAATCAACTTGTCCAGGTCAGCAATGGGGCACCAATTATCTGTATGGATTTATTGTCCAAGGACTCTGTTGAACATGACTGTGGTGCTGAGGATTGGATTGCTATCGGAGATGGTAAAGGAAATATGACAATTATTGAGGTTACCAAGGATGATTGCACTCCTACAGTGAGATTGTGCTTTACTTGGCCAGCTGAAACGGAGAGACAGCTCTTGGGTACTTATTGGTGCAAATCTCTGGGATGTAGGTATGTCTTCACAGCTGATCCTAGAGGAACATTGAAACTCTGGAGATTGCCTAACCCTTCACAATCTGATCTTCAGAGCTCCACGAGCAGTAACAAATTATCACTTATAGCAGAGTTCATATCAAGTTATGGAATGCGGATAATGTGTTTGGATGCATGCATGGAGGAAGAGGTTTTAGCATGCGGTGATGTGCGGGGTAATATGGTTTTGTTCCCTTTGCAAAAGAATCTGGTCCTGAGCATATCCGGTGCAGAAGAAAAGAAGATATCTCCAGTAAATAATTTCAAAGGAGTTCATGGGATTTCAAGTGTCTCCAGTGTTTCTGTGACTAAGCTTGGTTATAATCAGATAGAGATACGCTCAACCGGAGCAGATGGTTGCATATGTTATCTGGAATATGACAAAGAAATGCATAATTTGCAATTTACGGGAATGAAACAAGTTAAAGAATTGTCTTTGATTGAGTATGTTTCTGTGGATAACAAGTCTGGTGATAGATTGTCAAGCAGCTATGCAGCTGGTTTTGCATCCGTGGATTTCATAGTATGGAACTTAGTGAACGAAAATAAGGTGGTGAACATTCCATGTGGTGGATGGCGACGTCCTCATTCCTATTATTTGGGTGATATACCAGAGATGAAGAACTGCTTTGCCTTTGTCAAGGATGAATTGATACATATACATAGACAATGGATTCATAATAGAGATGGGAAGGTTTACCCTCAAAATTTACACACGCAATTCCATGGTAGAGAGATACATTCCTTGTGCTTTATCTCTGAAGATGTGGTAGTTGGAGATAATTTCAAGTGCACCTTATTTTCTAAATCAAGTTGGATTGCAACTGGATGTGAGGATGGAACTGTGAGGTTGACTTGGTACTCTTCAGGCACTGAAAATTGGTCGATGTCAAAACTGCTTGGAGAACATGTTGGAGGGTCAGCAGTGAGATCAATTTGTTGTGTGTCGAAAGTACACACAATTTCATCAGATATGGGTGATGTACCTGATGGGAGGATTGAACTGAATGCTGCGGTTGAGAAAAAGGATAATCCAACATTACTCATATCAGTGGGTGCAAAGCGTGTCTTAACCTCTTGGTTATTAAAAAATACGAGGCTGGACATAAAAAATGACTTCATAATCAATCATCAACACAAATCAGAAGGAGATGATGACTGTTTTTTGTCAAGTTTGTCCTCATCAATGACGTTCCAGTGGCTGTCTACTGATATGCCAGCCAAATGTTCAATTACACGTGATACTCCCAAAAATAATGTGCAGAAGATAGTTGGTGTTGCAGAAAATGTTTCTCATACAAATAATGATGCTGGATTGATTTCTGAGAGTGGAATGGCAAACTTGATCAGAGATAAACATGAAGATGACTGGAGATATCTTGCAGTCACAGCTTTTCTTGTTAGATGTTCCAGTTCCAGGATATCTGTTTGTTTTGTTGTTGTTGCATGTTCAGATGCCACACTTATGTTACGGGCTTTAGTTTTACCCTTTCGCTTGTGGTATGATGTCGCTTTACTAGTTCCTTTATTGGCACCAGTTTTGTCATTGCAGCATATCATATTTCCCCTGTGTAGGCCTTGTAAAGAAAACATCCAAGCTGGAAATGTTTATATTGTGATTAGTGGGTCTACTGATGGCAGTGTTGCTTTTTGGGACCTAACTGACAGTGTTGAAGCTTTTATGCAACGGGTTTCAGTTTGTAATGTCGAAAAGCTTTTTGATTGTCAAAAGCGACCACGCACGGGGAGAGGAAGTCAGGGTGGTAGACAGTGGAGGTCATTACGGAGAGACTTGTCAAAGAAAAGACAAGAAAGCAGTCTGGTCACTTTGAAAGCCAAAGAGAAGACCGAAAAGGGGACCCCTTACGTGCCAAGTGATTCTGAAGGCAACAGGACGTGTTGTTCTCAATCCACACATATGACTCTCCTTGAGTTAGAAAGCACGACTGATAATTCCTCGATGGAAATATGTGAAATACAGCCTCTATGCCTGCAAAAGATTCACCAATCTGGTGTCAACTGTCTCCATGTTTCAGAGATAAAGAGTGGGCAAAATACTGACTGTTGTGAAATGTACAGCATAGTTAGTGGGGGTGATGATCAAGCACTTAATCATCTAATGGTTGAATTATCACCTAAATCAATAAATTTAAGTGACGGGATTTTATGCCCTGAGATCACTCATATTGCCTCTGTGCCTGAATATGGAAAGGACTTCAACTTTAAAAATATGAGCAAGAAATTTAAGATTAGATTCTTAAATAACGAAAAATTACCCTCTGCCCACAGCGCTTCCGTCAAAGGTGTCTGGACAGACGGATCCTGGGTGTTTTCCACTGGACTTGATCAGCGGGTCAGATGCTGGCGTCTTCAGCAGAGGAAACTAATAGAGCATTCATATCTAATAGTTAGTGTACCAGAGCCAGAAGCGTTATCTGCTAGGGCTTGTGGCAGGAACCAATATCAAATTGCTGTCGCGGGAAGAGGAATGCAAATAATTGATTTTTCTGAATCTTTAAACAATATTGATGACTGA 4155 0.4197 MLKPYSATASLKEQNGFGERSNGCERPKRNGMAHAPWSLPGRHFSSVFSPPSKSLSPFSARGYRFALSALNFTLFNLHLFNQVNLPSGLGSEIAVYDLELSKRIRSFSVFEGVRVHGIASSFPRGTMIAVFGETRVKLFSFEFDAVSGSAELTLAHLLPKFGHWVLDVCFLEGCLPHSNVEGHFLAVGCSDNSVHVWDFSNSIAVLKVQSPVRCLLYSMRLWGHNLEVLRIASGTIFNELKDKLFEATHVCKLIGHEGSIFRIAWSSCGSKLVSVSDDRSARVWAVSIEGEHALCHNSTPLVLFGHNARVWDCSISDNLFVTVSEDCTCRIWGVDGKQLQVIKEHIGRGIWRCLYDPNSSLLITAGFDSAIKVHKPHASLPMGLEAVQGSPCSTELFSICTPNVSEHIGFMDSKSEYVRCLRFSCQDSLYVATNQGYLYHAKLCDTGGAQWNQLVQVSNGAPIICMDLLSKDSVEHDCGAEDWIAIGDGKGNMTIIEVTKDDCTPTVRLCFTWPAETERQLLGTYWCKSLGCRYVFTADPRGTLKLWRLPNPSQSDLQSSTSSNKLSLIAEFISSYGMRIMCLDACMEEEVLACGDVRGNMVLFPLQKNLVLSISGAEEKKISPVNNFKGVHGISSVSSVSVTKLGYNQIEIRSTGADGCICYLEYDKEMHNLQFTGMKQVKELSLIEYVSVDNKSGDRLSSSYAAGFASVDFIVWNLVNENKVVNIPCGGWRRPHSYYLGDIPEMKNCFAFVKDELIHIHRQWIHNRDGKVYPQNLHTQFHGREIHSLCFISEDVVVGDNFKCTLFSKSSWIATGCEDGTVRLTWYSSGTENWSMSKLLGEHVGGSAVRSICCVSKVHTISSDMGDVPDGRIELNAAVEKKDNPTLLISVGAKRVLTSWLLKNTRLDIKNDFIINHQHKSEGDDDCFLSSLSSSMTFQWLSTDMPAKCSITRDTPKNNVQKIVGVAENVSHTNNDAGLISESGMANLIRDKHEDDWRYLAVTAFLVRCSSSRISVCFVVVACSDATLMLRALVLPFRLWYDVALLVPLLAPVLSLQHIIFPLCRPCKENIQAGNVYIVISGSTDGSVAFWDLTDSVEAFMQRVSVCNVEKLFDCQKRPRTGRGSQGGRQWRSLRRDLSKKRQESSLVTLKAKEKTEKGTPYVPSDSEGNRTCCSQSTHMTLLELESTTDNSSMEICEIQPLCLQKIHQSGVNCLHVSEIKSGQNTDCCEMYSIVSGGDDQALNHLMVELSPKSINLSDGILCPEITHIASVPEYGKDFNFKNMSKKFKIRFLNNEKLPSAHSASVKGVWTDGSWVFSTGLDQRVRCWRLQQRKLIEHSYLIVSVPEPEALSARACGRNQYQIAVAGRGMQIIDFSESLNNIDD 1384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02016 1384 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 253 284 - -
Vimu6g02016 1384 Gene3D - 1052 1372 IPR015943 GO:0005515
Vimu6g02016 1384 Pfam WD domain, G-beta repeat 250 284 IPR001680 GO:0005515
Vimu6g02016 1384 Pfam WD domain, G-beta repeat 777 824 IPR001680 GO:0005515
Vimu6g02016 1384 Pfam WD domain, G-beta repeat 162 198 IPR001680 GO:0005515
Vimu6g02016 1384 PANTHER WD REPEAT PROTEIN 84 1377 - -
Vimu6g02016 1384 MobiDBLite consensus disorder prediction 1 32 - -
Vimu6g02016 1384 SMART WD40_4 296 333 IPR001680 GO:0005515
Vimu6g02016 1384 SMART WD40_4 246 285 IPR001680 GO:0005515
Vimu6g02016 1384 SMART WD40_4 151 198 IPR001680 GO:0005515
Vimu6g02016 1384 SMART WD40_4 335 375 IPR001680 GO:0005515
Vimu6g02016 1384 SMART WD40_4 1286 1329 IPR001680 GO:0005515
Vimu6g02016 1384 SMART WD40_4 773 826 IPR001680 GO:0005515
Vimu6g02016 1384 SMART WD40_4 506 548 IPR001680 GO:0005515
Vimu6g02016 1384 SUPERFAMILY WD40 repeat-like 135 549 IPR036322 GO:0005515
Vimu6g02016 1384 SUPERFAMILY WD40 repeat-like 532 1336 IPR036322 GO:0005515
Vimu6g02016 1384 Gene3D - 299 516 IPR015943 GO:0005515
Vimu6g02016 1384 ProSiteProfiles Trp-Asp (WD) repeats profile. 253 284 IPR001680 GO:0005515
Vimu6g02016 1384 Gene3D - 76 298 IPR015943 GO:0005515
Vimu6g02016 1384 ProSiteProfiles Trp-Asp (WD) repeats profile. 1079 1101 IPR001680 GO:0005515
Vimu6g02016 1384 Gene3D - 615 949 IPR015943 GO:0005515
Vimu6g02016 1384 MobiDBLite consensus disorder prediction 1118 1171 - -
Vimu6g02016 1384 MobiDBLite consensus disorder prediction 1133 1161 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02016 K24737 - gmx:100780968 2176.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02016 6 18043587 18055187 Vimu6g02016 6 18043587 18055187 ECH