Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02005 TTGCCTGCGGAAACCTTTCATTTCGCCTCATCGACAGAGAGAAAAATATTAACGATGAGATTTCGTGGGAGCTTTATTTTTCGCCGTTTTCTTTCTCAGTTTCGAAAGCAATTCGATTCAAAATCCGAATTCCCACTTCCGAGTTTCCGGCGTCGAGCTCCGTTCTTCCTTCGTTCTTATTCTTCCGAACTGCCAGGTCAACTGTCGCCTGAACTCTTGAACATAATGGAACAAAGACTCTCCGCAATTGAGTACCGGACTGCATGTCTCAGCAAATTTCTAAATCAGCCAGAAGCATCGCCATCAGAATATGCAAGAGCTAACAAGGAGCTTCGGAAGCTAAGTGGTTCTGTGGACCTTATTAATGAATTGAGGACCAAACAGAAGGAAATGGGTCAGGCAATAGAAGAAGAAAGAAGACTGCAAAATTTGCTGCTGAAGTCATTACTTCCTAAGGATGATGCTAATGAAAGGGATTGCATTTTGGAGGTACGAGCAGGCACTGGAGGGGAGGAGGCTTCCCTGTTTGCAATGGATATCTTTAGAATGTATGAGAAGTATGCTCTCAAGAAAGGCTGGAAATTTGAAGTAGTAGATATAGCTCAATCTGATCTGAAAGGTTATAAGGTACATATTTCTTATATTATTGTAGTCAATATGAAGAGGGTTTTGTACTGTGTGTCTCTAGTTCCTGCCAGTAGAGTTGAATTTCATCCTGCAATTGATGTAGTTTGGACTATTCTTTCTCAGGAGGCTAGTGCAGCAATTGCAGGAGTTGGTGTTTATGGGAAACTAAAATTTGAGAGTGGAATCCATCGTGTCCAGCGAGTTCCCGTGACAGAAAAGTCAGGACGAATTCATACCAGTGCTGTTTCTGTTGCAATTCTTCCTCAGGCTGATGAGGAATCAATTCCGGTTACATGCAATCCCAGTGATGGCAAATCTTCCGGTGGAAGTAATCACCGAAATCCTATCCCGTCTGTCGGTTGTTGCGGCTCCGCTCCACCTGCAAGTGGTGGTGCTCCCTCATCGACACCACCCACTTCATCCTATTCCACCTCAGCAAATCCCACACCACCCTCATTCTCCGTCACCGTTGACCTTCAATCCCTCGAGAAACCCCTCGAAATCACTCACCCTCTCATGTGCTACAGCAACAGCACCAAGGTTCTCGGTTCCTGCAACAACCTCATCTGTATCTCCAACGTCGCCGACGACATCGCCTTATGGAACCCTCACCTCCGCAAGCACCAGATTCTCCCCGCTGACCGCTTCAACTGCCCGGACTTCTCCCTAGCATGCCTTACGCCCTCTGCTGTAGATGTTCTATTGAAGAATGAAGACTTAAGAATCGACACCTATAGATCTGGTGGTTCAGGTGGTCAGCATGCAAATACAACGAACAGTGCTGTTAGAGTAACCCACATTCCAACAGGGATTATGATTACTATACAAGATGAGCGGTCTCAACATATGAACAAGGCCAAAGCTCTCAAGGTACTCTGTGCAAAACTATATGAAATGGAAAGGCTAAGACTTCATAGAAGTCGATCAAAGCTTCGATCTGAGCAGATTGGTAGTGGGGACAGATCTGAACGCATCAGAACATACAATTTTCCTCAGGGCCGGGTAACTGATCACAGAGTTGGTATCACTTATCACTCGGTAGATGATGTGATGCAAGGTGAAAATCTTGACGTCTTCATCGATGCCCTTTTATTGCATGAAGAAATGGATGCAATTGCAACTTTTAGTTCGTCTCAGTAA 1767 0.4505 MPAETFHFASSTERKILTMRFRGSFIFRRFLSQFRKQFDSKSEFPLPSFRRRAPFFLRSYSSELPGQLSPELLNIMEQRLSAIEYRTACLSKFLNQPEASPSEYARANKELRKLSGSVDLINELRTKQKEMGQAIEEERRLQNLLLKSLLPKDDANERDCILEVRAGTGGEEASLFAMDIFRMYEKYALKKGWKFEVVDIAQSDLKGYKVHISYIIVVNMKRVLYCVSLVPASRVEFHPAIDVVWTILSQEASAAIAGVGVYGKLKFESGIHRVQRVPVTEKSGRIHTSAVSVAILPQADEESIPVTCNPSDGKSSGGSNHRNPIPSVGCCGSAPPASGGAPSSTPPTSSYSTSANPTPPSFSVTVDLQSLEKPLEITHPLMCYSNSTKVLGSCNNLICISNVADDIALWNPHLRKHQILPADRFNCPDFSLACLTPSAVDVLLKNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGIMITIQDERSQHMNKAKALKVLCAKLYEMERLRLHRSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITYHSVDDVMQGENLDVFIDALLLHEEMDAIATFSSSQ 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02005 588 Gene3D - 508 588 - -
Vimu6g02005 588 MobiDBLite consensus disorder prediction 343 359 - -
Vimu6g02005 588 SUPERFAMILY Release factor 438 576 IPR045853 -
Vimu6g02005 588 MobiDBLite consensus disorder prediction 304 323 - -
Vimu6g02005 588 SMART PCRF_a_2 119 268 IPR005139 GO:0006415
Vimu6g02005 588 Gene3D - 71 140 - -
Vimu6g02005 588 Coils Coil 121 144 - -
Vimu6g02005 588 Gene3D - 156 318 - -
Vimu6g02005 588 Pfam RF-1 domain 441 548 IPR000352 GO:0003747|GO:0006415
Vimu6g02005 588 SUPERFAMILY Release factor 112 215 IPR045853 -
Vimu6g02005 588 Gene3D - 417 507 - -
Vimu6g02005 588 MobiDBLite consensus disorder prediction 304 359 - -
Vimu6g02005 588 Pfam PCRF domain 90 212 IPR005139 GO:0006415
Vimu6g02005 588 Pfam PCRF domain 250 293 IPR005139 GO:0006415
Vimu6g02005 588 SUPERFAMILY Release factor 250 313 IPR045853 -
Vimu6g02005 588 PANTHER LD18447P 437 584 - -
Vimu6g02005 588 FunFam Peptide chain release factor 1 437 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02005 Vimu-Chr6 17961981 17968804 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02005 K02835 - gmx:100800412 375.17