Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01995 ATGGCTAACCCAACACAACCTAATGTTGGGTTCACCCCTGAGAGAGAGAGTGCAGCCCCTGAGAAGAATCCCATTCCGCCCCCTCCTAATTTTGTACCGTCACCACCTGGTTTTCCTCCAACAAAACTGCCCTCACAGCAAGATCAATCTTCTTCCCGTTCCGTTAAAACCCCTAACGTTCTATCACCAGCCAATGGGGTTACCACTGGCAGTTCTGTTCCTCACTTGAGCATCCCTCCTGGGCCGCCGGTGTTTACGTCGCCTGTCCGTCCAGCTTCGGTTCCTTTTCGAACATCGCCTGCATCGCCTCAGCCTGTTGCATTTTCTTCAGTCTCTTCTTTGCCAACGTCAACGGCATCATCGCCACTGCAATTTTCAAATGGATCGTTTGAGTTGCAGCATCAAGTTTACGATAGCATAGACGACAATGTTCCCGTTGGAGAGTCATCATTTGTTCTTTTTTCAGCTCGTAAGGTACTGAAACAGAAGAAACAAGCTAATGTGCCCAGTTTGGGTTTTGGGGCATTGGTCTCTCCTGGGAGGGAGGTTTCAATGGGCCCCCAGGTAATACAGCGTGATCCTCATCGTTGCCAAAGCTGTGGTGCTTATGCAAATATATATTGCAACATATTACTTGGATCAGGCCAGTGGCAGTGTGTTATATGTAGGAAATTGAATGGAAGTGATGGGGAGTACATTGCACATAGCAAGGAAGATCTACGCAGATTTCTGGAATTATCTTCAACCATGTTTGATTATGCTCAAAATGAGAACAAGAGACCAGGTTTTGTTCCAGTTTCTGATTCTAGAATGTCTGCACCAATTGTTCTTGTTATAGATGAATGTTTAGATGAACCTCATCTACACCATCTACAGAGTTCTTTGCATGCTTTTGTTGATTCCCTCCCGCCAACAACGAGATTAGGAATTGTACTATATGGTCGGACCGTTTCAGTGTATGACCTTTCAGAAGAGTCAATGGCATCTGCTGATGTGCTGCCTGGGGAGAAATCACCAAGTCAAGAATCTTTGAAGGCTTTAATTTATGGTACTGGCATATACTTGTCACCAATGCATGCTTCACTGGCTGTAGCACATTCTATATTTTCATCATTGAGGGCATACAAGTTAAATATACCAGAAGCTTCTCGTGACCGATGCTTAGGAACTGCAGTTGAGGTTGCTCTTGCTATCATTCAGGGCCCATCTGCCGATCTGTCCAGGGGGGTGGTCAAAAGGTCAGGGGGAAATAGTAGAATTATTGTCTGTGCTGGTGGACCGAACACTTATGGGCCTGGATCTGTCCCTCATTCTTTTAGTCATCCTAATTATCCTTACAGGGAAAAGACTGCAATTAAGTGGATGGAAAATCTTGGTCGTGAGGCTCATCGGCACAATACTATAATTGATGTTTTATGTGCTGGAACATGCCCTGTAAGAGTGCCGATCTTACATCCTCTTGCAAAGGCATCAGGTGGAGTTTTTGTTCTCCATGATGATTTTGGGGAAGCTTTTGGTGTTAATTTGCAAAGGGCATCTGCCAGATCAGCGGGCTCTCATGGTTTGTTAGAGTTGCGTACATCAGATAATATTGTCATTACTCAAGTCATCGGCCCAGGGGAAGAGTCACATGTCGATACCCATGAAACATTTAAAAATGATACTGCCCTTTATATTCAAATGCTAAGTGTTGAGGAAACCCAAAGTTTCTCTCTCTCCATGGAAACTGAAGGAGATATTAAAAGTGATTTTGTCTTTTTCCAATTTGCAATTCAATATTCAAATGTGTATCAAGCTGATGTGTCGAGGGTCATTACTGTTAGGTTGCCAACAGTAGATAGTATTTCGGCATATCTTGAGAGTGTTCAGGACGAAGTGGCCTCTGTCCTCATTGCAAAAAGAACCCTGTTACGAGCCATAAACCATTCTGATGCAATTGATATGCGAACAACAATAGATGAAAGAATCAAGGATATTGCTCTAAAATTTGGTTCCCAATTACCCAAGTCAAAACTTCACAGCTTCCCGAAGGAGCTTGCTCTCTTACCAGAGCTCCTTTTCCATCTCAGGAGAGGACCACTCTTGGGAAGCATTATTGGCCATGAAGATGAGAGGTCTGTGCTGAGGAATTTGTTTCTGAATGCATCCTTTGATCTATCACTCAGAATGGTAGCTCCCCGTTGTTTAATGCACAGGGAAGGGGGAACTTTCGAGGAGCTACCAGCATATGATCTTGCTATGCAGTCTGATGCGGCTGTTGTACTTGACCATGGCACTGATGTCTTCATTTGGTTGGTTGTTATGGCACTTACCTCAGCCATTAAGTTATTCATGCTGGCCACTGTTGCCAACAGCAGCTTGAGGCTGGTGGCCAGATGGCTAGTCAAGGGTGTGACAACTGGTAACCCATACTTGGGAAAAGGAAACGGTGCCGAACTTGCAGCTGATGAAGGAAGAAGTGCTGCTGCTCTAGCCGCATGTAGGACATTGGCAGAAGAGCTGACTGAGTGCCGTTTTCCAGCTCCTCGCATCCTTGCATTTAAGGAGGGTAGCTCCCAGGCTCGATATTTTGTTTCTCGTCTCATCCCAGCGCACAAGGATCCTCCTTATGAGCAGGAGGCAAGATTCCCACAGCTCAGGTCGTTGACATCAGAACAGCGTACAAAGCTGAAAGCCAGTTTTGTTCATTTCGATGATCCTAGTTTTTGTGAATGGATGCGAAGCTTGAAAGTGGTGCCACCTCAACCGAGCTGA 2754 0.4521 MANPTQPNVGFTPERESAAPEKNPIPPPPNFVPSPPGFPPTKLPSQQDQSSSRSVKTPNVLSPANGVTTGSSVPHLSIPPGPPVFTSPVRPASVPFRTSPASPQPVAFSSVSSLPTSTASSPLQFSNGSFELQHQVYDSIDDNVPVGESSFVLFSARKVLKQKKQANVPSLGFGALVSPGREVSMGPQVIQRDPHRCQSCGAYANIYCNILLGSGQWQCVICRKLNGSDGEYIAHSKEDLRRFLELSSTMFDYAQNENKRPGFVPVSDSRMSAPIVLVIDECLDEPHLHHLQSSLHAFVDSLPPTTRLGIVLYGRTVSVYDLSEESMASADVLPGEKSPSQESLKALIYGTGIYLSPMHASLAVAHSIFSSLRAYKLNIPEASRDRCLGTAVEVALAIIQGPSADLSRGVVKRSGGNSRIIVCAGGPNTYGPGSVPHSFSHPNYPYREKTAIKWMENLGREAHRHNTIIDVLCAGTCPVRVPILHPLAKASGGVFVLHDDFGEAFGVNLQRASARSAGSHGLLELRTSDNIVITQVIGPGEESHVDTHETFKNDTALYIQMLSVEETQSFSLSMETEGDIKSDFVFFQFAIQYSNVYQADVSRVITVRLPTVDSISAYLESVQDEVASVLIAKRTLLRAINHSDAIDMRTTIDERIKDIALKFGSQLPKSKLHSFPKELALLPELLFHLRRGPLLGSIIGHEDERSVLRNLFLNASFDLSLRMVAPRCLMHREGGTFEELPAYDLAMQSDAAVVLDHGTDVFIWLVVMALTSAIKLFMLATVANSSLRLVARWLVKGVTTGNPYLGKGNGAELAADEGRSAAALAACRTLAEELTECRFPAPRILAFKEGSSQARYFVSRLIPAHKDPPYEQEARFPQLRSLTSEQRTKLKASFVHFDDPSFCEWMRSLKVVPPQPS 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01995 917 MobiDBLite consensus disorder prediction 1 79 - -
Vimu6g01995 917 Pfam Sec23/Sec24 trunk domain 276 502 IPR006896 GO:0006886|GO:0006888|GO:0030127
Vimu6g01995 917 MobiDBLite consensus disorder prediction 43 75 - -
Vimu6g01995 917 SUPERFAMILY Helical domain of Sec23/24 624 724 IPR036175 GO:0006886|GO:0006888|GO:0030127
Vimu6g01995 917 Pfam Sec23/Sec24 beta-sandwich domain 520 611 IPR012990 -
Vimu6g01995 917 FunFam Protein transport protein SEC23 185 247 - -
Vimu6g01995 917 CDD trunk_domain 268 511 - -
Vimu6g01995 917 Gene3D von Willebrand factor, type A domain 274 519 IPR036465 -
Vimu6g01995 917 Gene3D - 184 247 - -
Vimu6g01995 917 SUPERFAMILY beta-sandwich domain of Sec23/24 24 622 - -
Vimu6g01995 917 SUPERFAMILY Zn-finger domain of Sec23/24 188 257 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Vimu6g01995 917 FunFam Protein transport protein SEC23 612 732 - -
Vimu6g01995 917 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 819 910 IPR036180 -
Vimu6g01995 917 Gene3D Sec23/Sec24 helical domain 612 732 - -
Vimu6g01995 917 MobiDBLite consensus disorder prediction 20 42 - -
Vimu6g01995 917 Gene3D Severin 800 879 IPR029006 -
Vimu6g01995 917 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 814 914 IPR037364 -
Vimu6g01995 917 Pfam Sec23/Sec24 zinc finger 194 232 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Vimu6g01995 917 Pfam Sec23/Sec24 helical domain 625 721 IPR006900 GO:0006886|GO:0006888|GO:0030127
Vimu6g01995 917 SUPERFAMILY vWA-like 275 507 IPR036465 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01995 - - gmx:100781518 1587.01