Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu6g01994 | AAATTAAAGAGGGCGGAGGGCGCACAGTGGAACACTTTATCTGAAGTGAAAACCCTAGGGTCAACCGTAGCGCCACAATCGCTCTCGCGCGTTTCGCTCGTCTTCGGCATCTTTGCAACGGGTAACTTGCAGCTTGGATTCCAATCCCGATATGACTCTCTGCTTCGCTTCCTAATGTTAACATTTATCTTTTTGGCCATGGCAGGATCAGGTGTTCCTCCTTCACCATGGCGGGGACTGAAGCCAAAAAAGCTTCCGCTAAGCAATCCGGTAATTTGCATTATTCACGCGTATTTGCATTTGTGTATCTATATGTTCTTTCATCTAATGGCGAGCGAACGAAGTCTTGCAGGTGGGAAGAAGAAGGAGGTGAAGAAGGAGACTGGCTTAGGTCTCACGCACCGAAAGGCGGAGAACTTCGGCGAGTGGTATTCTGAGGTTGTTGTTAATGCTGAAATGATTGAATACTATGATATATCTGGTTGCTATATTTTGAGGCCTTGGTCCATGGCAATTTGGGAGATCATGCAAGTCAGAGTTGCTTCTAATGTTGAAAATAATCTGCAGGAGTTTTTCGATCCGGAAATAAAGAAAATGAAAATCAAGAACTGCTACTTCCCTTTGTTTGTGTCTCCTGGAGTTTTGCAAAAGGAGAAGGATCACGTTGAGGGTTTTGCCCCTGAGGTTGCTTGGGTAACAAAATCCGGGGAATCTGAATTAGAAATTCCTATTGCTATTCGTCCAACTAGTGAAACTGTCATGTATCCCTACTACTCTAAGTGGATAAGGGGACATCGTGACTTACCTTTGAAACTTAATCAGTGGTGTAATGTTGTTAGATGGGAGTTCAGCAATCCCACACCATTCATCAGGAGTCGTGAGTTTCTTTGGCAAGAAGGGCACACTGCTTTTGCAACAAAGGAGGAAGCAGATGCAGAGGTTCTTGACATTCTGGAATTATATAGGCGTATATATGAAGAGTATTTAGCTGTTCCTGTCATAAAGGGTAAGAAAAGTGAGCTTGAGAAGTTTGCTGGTGGGCTTTACACTACTAGTGTTGAGGCGTTTATTCCAAACACTGGTCGTGGCATACAAGGTGCAACTTCTCATTGTCTGGGCCAAAACTTTGCTAAAATGTTTGAGATAAACTTTGAAAATGAAAAGGGAGAGAAAGCAATGGTGTGGCAGAACTCATGGGCCTATAGTACTAGAACTATTGGGGTCATGGTGATGGTTCATGGTGATGACAAGGGATTGGTACTGCCTCCTAAAGTAGCATCAGTACAAGTCATTGTGATTCCTGTGCCTTACAAAGACGCTGATACTCAAGGAATATTTGATGCCTGTTCTGCAACTGTGAATGCATTGTCTGAAGCTGGTATTCGTGCTGAATCGGATTTTAGAGATAATTATTCTCCAGGATGGAAGTATTCTCACTGGGAAATGAAAGGTGTTCCTCTAAGAATTGAAATTGGGCCAAAAGATTTAGCGAATAAGCAGGTTCGTGCTGTTCGACGTGATAATGGAGCAAAGATAGACATTGCTAGTGCTGATTTGGCTGTTGAAATAAAAAAGTTGCTTGATAATATTCAGCAGAACCTGTTTGATATTGCAAAACAAAAACGAGATGAATGCATTCAGATTGTACACACTTGGGATGAATTTGTGCAAGCTTTGAACCAAAGAAAAATGATCTTAGCTCCATGGTGTGATGAGGAGGAGGTGGAGGCTGATGTCAAAGCGAGAACAAAGGGTGAGATGGGAGCAGCTAAGACTCTTTGCAGCCCCTTTGATCAGCCAGAACTCCCAGAAGGCACTAAGTGCTTTGCGTCTGGAAAGCCTGCAACAAAGTGGACATACTGGGGCAGAAGTTACTAG | 1878 | 0.4329 | KLKRAEGAQWNTLSEVKTLGSTVAPQSLSRVSLVFGIFATGNLQLGFQSRYDSLLRFLMLTFIFLAMAGSGVPPSPWRGLKPKKLPLSNPVICIIHAYLHLCIYMFFHLMASERSLAGGKKKEVKKETGLGLTHRKAENFGEWYSEVVVNAEMIEYYDISGCYILRPWSMAIWEIMQVRVASNVENNLQEFFDPEIKKMKIKNCYFPLFVSPGVLQKEKDHVEGFAPEVAWVTKSGESELEIPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKEEADAEVLDILELYRRIYEEYLAVPVIKGKKSELEKFAGGLYTTSVEAFIPNTGRGIQGATSHCLGQNFAKMFEINFENEKGEKAMVWQNSWAYSTRTIGVMVMVHGDDKGLVLPPKVASVQVIVIPVPYKDADTQGIFDACSATVNALSEAGIRAESDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANKQVRAVRRDNGAKIDIASADLAVEIKKLLDNIQQNLFDIAKQKRDECIQIVHTWDEFVQALNQRKMILAPWCDEEEVEADVKARTKGEMGAAKTLCSPFDQPELPEGTKCFASGKPATKWTYWGRSY | 625 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu6g01994 | 625 | FunFam | Proline--tRNA ligase, cytoplasmic | 546 | 625 | - | - | |
| Vimu6g01994 | 625 | Hamap | Proline--tRNA ligase [proS]. | 133 | 625 | IPR004499 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Vimu6g01994 | 625 | Gene3D | Bira Bifunctional Protein; Domain 2 | 133 | 422 | IPR045864 | - | |
| Vimu6g01994 | 625 | Pfam | Anticodon binding domain | 429 | 525 | IPR004154 | - | |
| Vimu6g01994 | 625 | PRINTS | Prolyl-tRNA synthetase signature | 244 | 255 | IPR002316 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Vimu6g01994 | 625 | PRINTS | Prolyl-tRNA synthetase signature | 284 | 295 | IPR002316 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Vimu6g01994 | 625 | PRINTS | Prolyl-tRNA synthetase signature | 203 | 221 | IPR002316 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Vimu6g01994 | 625 | PRINTS | Prolyl-tRNA synthetase signature | 274 | 282 | IPR002316 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Vimu6g01994 | 625 | Gene3D | - | 423 | 543 | IPR036621 | - | |
| Vimu6g01994 | 625 | Gene3D | - | 546 | 625 | IPR017449 | GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Vimu6g01994 | 625 | SUPERFAMILY | Class II aaRS and biotin synthetases | 138 | 416 | IPR045864 | - | |
| Vimu6g01994 | 625 | Pfam | Prolyl-tRNA synthetase, C-terminal | 552 | 625 | IPR016061 | GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Vimu6g01994 | 625 | FunFam | Bifunctional glutamate/proline--tRNA ligase | 132 | 422 | - | - | |
| Vimu6g01994 | 625 | SUPERFAMILY | Class II aaRS ABD-related | 417 | 543 | - | - | |
| Vimu6g01994 | 625 | SMART | ProRS_C_1_2 | 552 | 625 | IPR016061 | GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Vimu6g01994 | 625 | SUPERFAMILY | C-terminal domain of ProRS | 547 | 625 | IPR017449 | GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Vimu6g01994 | 625 | PANTHER | PROLYL-TRNA SYNTHETASE | 117 | 625 | IPR004499 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Vimu6g01994 | 625 | NCBIfam | proline--tRNA ligase | 135 | 625 | IPR004499 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Vimu6g01994 | 625 | CDD | ProRS_core_arch_euk | 139 | 412 | IPR033721 | - | |
| Vimu6g01994 | 625 | CDD | ProRS_anticodon_zinc | 418 | 625 | - | - | |
| Vimu6g01994 | 625 | FunFam | bifunctional glutamate/proline--tRNA ligase | 423 | 543 | - | - | |
| Vimu6g01994 | 625 | Pfam | tRNA synthetase class II core domain (G, H, P, S and T) | 244 | 410 | IPR002314 | GO:0000166|GO:0004812|GO:0005524|GO:0006418 | |
| Vimu6g01994 | 625 | ProSiteProfiles | Aminoacyl-transfer RNA synthetases class-II family profile. | 179 | 422 | IPR006195 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu6g01994 | Vimu-Chr6 | 17899512 | 17903948 | Dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu6g01994 | K01881 | - | gmx:100782067 | 994.571 |