Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu6g01978 | ATGAAAATCTTAGAGGCCAATGCTGGTGCACTCACAAATTTTGAGGTCCTTGATTTCTTTCGAGCCAAAGGAGCTTCAAAGGATCCGACAAGGGTTATTGTCAAAGTAGCGCACTCTGAATACAAGGTTTATGATTATTTGGTTGACACTGCTGCCTCTGATCAAACAAGAGAGAACATAGATGAGTTTTTGACAAGCATTAAACGACATGACCTAGCTAAAGCTGAGGTTCTGAACATATTGAACACTAGGCCAGCTGCTGAAGTTGAAATATTTCCTATCATAGAGAATTGTGAGGGGCGTTCTCCAGATGAAGAAAAAGAGGTGACCGAAATAGTTGACCCGGTGACGAAAACATTACCACCACCTCCCAATATGAAGCACGAAGAAATCAACAAGGGTGACTGA | 408 | 0.4191 | MKILEANAGALTNFEVLDFFRAKGASKDPTRVIVKVAHSEYKVYDYLVDTAASDQTRENIDEFLTSIKRHDLAKAEVLNILNTRPAAEVEIFPIIENCEGRSPDEEKEVTEIVDPVTKTLPPPPNMKHEEINKGD | 135 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu6g01978 | 135 | Pfam | RNA polymerase Rpb4 | 32 | 119 | IPR005574 | GO:0006352|GO:0030880 | |
| Vimu6g01978 | 135 | SUPERFAMILY | HRDC-like | 4 | 121 | IPR010997 | GO:0000166|GO:0044237 | |
| Vimu6g01978 | 135 | Gene3D | - | 1 | 121 | IPR038324 | - | |
| Vimu6g01978 | 135 | PANTHER | CALCITONIN GENE-RELATED PEPTIDE-RECEPTOR COMPONENT PROTEIN | 1 | 131 | IPR038846 | GO:0005666|GO:0006384 | |
| Vimu6g01978 | 135 | SMART | rpol4neu2 | 1 | 123 | IPR006590 | - | |
| Vimu6g01978 | 135 | FunFam | RNA polymerase II, Rpb4, core protein | 1 | 121 | - | - | |
| Vimu6g01978 | 135 | MobiDBLite | consensus disorder prediction | 115 | 135 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu6g01978 | Vimu-Chr6 | 17749613 | 17751532 | Dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu6g01978 | K25304 | - | gmx:100789488 | 196.438 |