Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01976 ATGGGTTGGGAAGGAGGTCTCAAAAGCATGGTGTTGATGGGTGCTTTTATGGTGGCCATGGTGGCTGTTCAAAATGTGGTGTGCGAGGAAGGTGTTGATCATGTTCGTGACTCAGCACGCAATTTAGTTCAGAACGGTGGCTTCGTTCGACGAAGCGGCACCAACTTTGTTCTGAACAACAAGCGTTTCTACTTTAACGGATTCAACGCTTACTGGTTAATGTTAATGGCATCTGATCCATCAACGAGGCCCAAGGTCACTTCCGTTTTGCAACAAGCTTCCAGCCATGGCTTAACCGTTGCCAGAACTTGGGCTTTCAACGATGGAGCTTACAGAGCCCTTCAGGTTTCTCCTGGTTCGTACGACGAGAAAGTATTCAGGGGATTGGACTTTGTGATATCAGAAGCGGGAAAAAATGGTGTACGATTGATACTGAGCTTGGTGAACAACTGGAAAGATTTTGGTGGAAAAAATCAGTACGTGGAATGGGTGAAGCAGCATGGTGAGTACGTGAACACTGAAGATGATTTCTTTACGCATCCTTTGGCCAAACAACACTTCAAAAACCATATCAAGGCTGTGCTGACGAGAAAAAACACAGTAAGTGGGGTGGCATATAAGGACGATCCTGCCATATTTGCATGGGAACTTATGAACGAACCCCGTTGCCAACACGACAACTCCGGAAAAGTTGTTCAGGAATGGGTGATTGAGATGGCTGCATACGTCAAATCCATCGATAGCAATCATTTGCTTGAAATAGGACTCGAAGGGTTCTATGGTGAAGATAAAAAACAAATCAATCCTGGGTACCAACTTATTGGCACTGATTTCATTTCTAACAACCTAGTTCATCATGTCGATTTTGCCACCATGCATCTCTACCCTGAACAATGGCTGCCAGGCTCAAATGAAGCTGCTCAGGTTGCATTTGTTGACGAGTGGCTACAAAAGCACATTGAGGATTCGAAAAATGTTCTTGGGAAGCCTATTGTTGTTGGTGAATTTGGGAAGTCATGTAGGTCATACAGTGTGGCTGAAAGGGACAGTTACTTGAGCAAAATGTATAATGCAATATACAGTAATGCTATCAGTGGGGGACCCTGTGCTGGAGGGCTTTTTTGGCAGCTCATGGCTCAAGGAATGGACAATTTCTATGATGGTTATGAAATTGTCTTCGAGAACAGTCCTTCAACTACCAGAATTATTGATCAACAGTCCCACAAAATGTCAAGTATTGCTTAG 1245 0.4418 MGWEGGLKSMVLMGAFMVAMVAVQNVVCEEGVDHVRDSARNLVQNGGFVRRSGTNFVLNNKRFYFNGFNAYWLMLMASDPSTRPKVTSVLQQASSHGLTVARTWAFNDGAYRALQVSPGSYDEKVFRGLDFVISEAGKNGVRLILSLVNNWKDFGGKNQYVEWVKQHGEYVNTEDDFFTHPLAKQHFKNHIKAVLTRKNTVSGVAYKDDPAIFAWELMNEPRCQHDNSGKVVQEWVIEMAAYVKSIDSNHLLEIGLEGFYGEDKKQINPGYQLIGTDFISNNLVHHVDFATMHLYPEQWLPGSNEAAQVAFVDEWLQKHIEDSKNVLGKPIVVGEFGKSCRSYSVAERDSYLSKMYNAIYSNAISGGPCAGGLFWQLMAQGMDNFYDGYEIVFENSPSTTRIIDQQSHKMSSIA 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01976 414 Gene3D Glycosidases 44 414 - -
Vimu6g01976 414 PANTHER - 11 413 IPR045053 GO:0004553
Vimu6g01976 414 SUPERFAMILY (Trans)glycosidases 48 404 IPR017853 -
Vimu6g01976 414 Pfam Cellulase (glycosyl hydrolase family 5) 66 363 IPR001547 GO:0004553|GO:0071704
Vimu6g01976 414 FunFam Mannan endo-1,4-beta-mannosidase 6 45 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01976 Vimu-Chr6 17740945 17743085 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01976 10 413 Glycoside Hydrolase AT5G66460 53.056 1.07e-154 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01976 K19355 - gmx:100787923 731.095