Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01975 ATGATGGTGGCAAGTGAGCTACAAGGACTTTCCATGTCCCTGGGTTCAAAGAAGTCAACCTTCCACCGTGACAAGGATTTGCCTTCCTCATTCTCTGGTAGCAGAGTGAACTTGCTTCAATCAAAGAATGTAGTATCTGGTTTTCGTCCTGGAAAATTCTTTAGTGTCACACACAGAAACACAACCAGAAGATTTATGACTATGTCTACTCTTGCAGATGTTGCAAATGACTTTATGTCCCTTCAATCACCGATACTTACAGGAAGAGAAGCCAACCCAAAGACTGTTGCATCGATCATATTAGGCGGAGGAGCTGGAACTCGTCTGTTCCCCCTTACTCAAAGAAGAGCTAAACCTGCTGTACCATTTGGAGGATGCTATAGACTAGTTGACATACCGATGAGTAATTGCATTAACAGTGGAATTAACAAAATTTACGTCCTCACTCAATATAACTCTCAGTCCCTCAACCGACACATTGCTCGAACATATAATTTAGGAGGTTGCATCAACTTTGGAGGTGGTTTTGTTGAGGTATTGGCTGCAACTCAAACACCTGGTGAATCAGGAAAAAAGTGGTTTCAGGGTACAGCCGATGCTGTAAGACAGTTCCTTTGGTTGTTTGAGGACGCTGATCACAAAAATATAGAGAACGTTCTGATATTGTGTGGTGATCAGCTCTATCGAATGGATTACATGGACATTGTGCAGAAGCACGTTAATTCATGTGCTGATATATCAGTATCTTGTCTCCCAGTGGATGGCAGTCGGGCCTCTGATTTTGGATTGGTGAAGGTTGATGAAAGAGGACGGATATGTCAGTTCTTAGAAAAACCTAAGGGCGAATTGTTAAGATCTATGGTTCATGTAGATACGAGTATTTTTGGACTATCAGCTCAAGAAGCAAGAAAATTTCCATACATCGCGTCAATGGGTATATATGTGTTTAAAATAGATGTTCTGCTAAAAGTTCTCAGGGGCTGTTATCCTAATGCAAATGATTTTGGATCTGAGGTCATTCCCTTGGCTGCAAGAGATTTTAATGTCCAGGCATGTCTTTTCAATGGTTATTGGGAAGATATTGGGACTATAAAATCTTTCTTTGATGCGAACTTGGCTCTTATGGACCAGCCGCCCAAGTTTCAGTTGTATGACCAGTCCAAGCCTATTTTTACTTGTCCTCGGTTCCTACCACCAACTAAAATGGAGAAGTGCCAGGTAATTAACTCTTTGATTTCAGATGGTTGCTTTTTGAAAGAGTGCACAGTACAACATTCCATTGTGGGAATTCGATCACGACTTGATTCTGGAGTGCAGATAAAGGATACCATGATCATGGGTGCTGACTATTACCAAACAGAAGCTGAAATTGCTTCCCTTGTAGCAGCGGGAAATGTTCCAATAGGCATTGGGAAAAATACAAAAATTGTGTAA 1434 0.4128 MMVASELQGLSMSLGSKKSTFHRDKDLPSSFSGSRVNLLQSKNVVSGFRPGKFFSVTHRNTTRRFMTMSTLADVANDFMSLQSPILTGREANPKTVASIILGGGAGTRLFPLTQRRAKPAVPFGGCYRLVDIPMSNCINSGINKIYVLTQYNSQSLNRHIARTYNLGGCINFGGGFVEVLAATQTPGESGKKWFQGTADAVRQFLWLFEDADHKNIENVLILCGDQLYRMDYMDIVQKHVNSCADISVSCLPVDGSRASDFGLVKVDERGRICQFLEKPKGELLRSMVHVDTSIFGLSAQEARKFPYIASMGIYVFKIDVLLKVLRGCYPNANDFGSEVIPLAARDFNVQACLFNGYWEDIGTIKSFFDANLALMDQPPKFQLYDQSKPIFTCPRFLPPTKMEKCQVINSLISDGCFLKECTVQHSIVGIRSRLDSGVQIKDTMIMGADYYQTEAEIASLVAAGNVPIGIGKNTKIV 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01975 477 Gene3D Hexapeptide repeat proteins 396 477 - -
Vimu6g01975 477 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 75 476 IPR011831 GO:0005978|GO:0008878
Vimu6g01975 477 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 102 121 IPR005836 GO:0005978|GO:0008878
Vimu6g01975 477 SUPERFAMILY Nucleotide-diphospho-sugar transferases 96 421 IPR029044 -
Vimu6g01975 477 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 193 201 IPR005836 GO:0005978|GO:0008878
Vimu6g01975 477 SUPERFAMILY Trimeric LpxA-like enzymes 394 476 IPR011004 -
Vimu6g01975 477 NCBIfam glucose-1-phosphate adenylyltransferase 97 471 IPR011831 GO:0005978|GO:0008878
Vimu6g01975 477 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 309 319 IPR005836 GO:0005978|GO:0008878
Vimu6g01975 477 FunFam Glucose-1-phosphate adenylyltransferase 79 395 - -
Vimu6g01975 477 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 83 395 IPR029044 -
Vimu6g01975 477 CDD ADP_Glucose_PP 99 361 - -
Vimu6g01975 477 Pfam Nucleotidyl transferase 98 375 IPR005835 GO:0009058
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01975 Vimu-Chr6 17719887 17736756 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01975 K00975 - gmx:100786313 907.516