Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01974 ATGAAAACTAAAATAAGCGGTTTCCTGTTCCGTTTCATCCAACAACAGAATATGGCTTTAACTGGGCTCCCCCTAGCAACCTTCTTCCTCCTTCTCTCCGCTTCTTATCTCCAGATTGCTGGGGCGGAAGTTGAGTCGTTGACTGTTCTCAATCTTAACTCTCCAATTCTTAAGAAATCCATTGCTCAACAGGTTAACGAAAATCCCGAGGCAGGATGGGAGGCTGCCATAAATCCTCGTTTCTCCAATTATACAGTTAAACAATTTAAGCGCCTCCTTGGAGCCAAAGAAACGCCTAAGAACGTACTCGGAAGTGTACCTGTTATTTCTCATCCAAAATCATTGAATTTGCCGGTGAATTTTGATGCAAGGACCGCTTGGTCGCAGTGTAGCACTATTGGAAGAATTCTAGACTTTTTAAGTGATCCCTGTGCTGGTGTGATGATTCAGGGTCACTGTGGTTCTTGTTGGGCATTTGGTGCTGTAGAATCATTGTCAGATCGCTTTTGCATTCATTTTGATGTTAATATTTCTCTCTCTGTTAACGACCTTCTCGCATGCTGTGGCTTTCTGTGTGGATCTGGGTGTGATGGGGGATATCCCCTTTACGCATGGCGATACTTAGCCCACCATGGTGTTGTCACTGAAGAGTGCGACCCATATTTTGATCAAACTGGCTGTTCTCATCCTGGATGTGAGCCAGCTTATCGGACTCCGAAGTGTGTTAAAAAGTGTGTAAGTGGGAACCAGCTGTGGAAGAAGTCAAAGCACTATAGTGTCAATGCCTACAAGGTCAACTCTAATCCCCATGACATCATGGCAGAAGTGTACAAAAATGGGCCAGTTGAGGTCGCATTTACTGTTTATGAGGATTTTGCTCACTACAAGTCAGGAGTTTACAAACACGTCACAGGTTATGTACTCGGCGGTCATGCAGTGAAGCTAATTGGGTGGGGAACAACCGATGATGGGGTTGACTATTGGCTTCTCGCAAATCAGTGGAACAGAGAATGGGGAGATGATGGTTACTTCAAGATCAGAAGGGGGACAAATGAATGCGGGATTGAAGAGGAGGTAACTGCTGGTTTGCCGTCTACCAAAAACCTCGTAAGAGAGGTGACTGATATGGATGATGGCGCTGCTGTTTCATTCTCAATGTAA 1161 0.4496 MKTKISGFLFRFIQQQNMALTGLPLATFFLLLSASYLQIAGAEVESLTVLNLNSPILKKSIAQQVNENPEAGWEAAINPRFSNYTVKQFKRLLGAKETPKNVLGSVPVISHPKSLNLPVNFDARTAWSQCSTIGRILDFLSDPCAGVMIQGHCGSCWAFGAVESLSDRFCIHFDVNISLSVNDLLACCGFLCGSGCDGGYPLYAWRYLAHHGVVTEECDPYFDQTGCSHPGCEPAYRTPKCVKKCVSGNQLWKKSKHYSVNAYKVNSNPHDIMAEVYKNGPVEVAFTVYEDFAHYKSGVYKHVTGYVLGGHAVKLIGWGTTDDGVDYWLLANQWNREWGDDGYFKIRRGTNECGIEEEVTAGLPSTKNLVREVTDMDDGAAVSFSM 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01974 386 Pfam Peptidase family C1 propeptide 58 99 IPR012599 GO:0004197|GO:0050790
Vimu6g01974 386 Gene3D Cysteine proteinases 50 370 - -
Vimu6g01974 386 CDD Peptidase_C1A_CathepsinB 118 362 - -
Vimu6g01974 386 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 150 161 IPR000169 -
Vimu6g01974 386 Pfam Papain family cysteine protease 147 362 IPR000668 GO:0006508|GO:0008234
Vimu6g01974 386 SUPERFAMILY Cysteine proteinases 63 364 IPR038765 -
Vimu6g01974 386 FunFam cathepsin B-like protease 2 50 369 - -
Vimu6g01974 386 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 309 319 IPR025660 -
Vimu6g01974 386 PRINTS Papain cysteine protease (C1) family signature 327 333 IPR000668 GO:0006508|GO:0008234
Vimu6g01974 386 PRINTS Papain cysteine protease (C1) family signature 311 321 IPR000668 GO:0006508|GO:0008234
Vimu6g01974 386 PRINTS Papain cysteine protease (C1) family signature 150 165 IPR000668 GO:0006508|GO:0008234
Vimu6g01974 386 SMART pept_c1 117 363 IPR000668 GO:0006508|GO:0008234
Vimu6g01974 386 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 67 356 IPR013128 GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01974 Vimu-Chr6 17710381 17716296 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01974 K01363 - gmx:100788988 673.315