Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01946 ATGGCAAGGAAGAAGATCAGAGAGTATCACTCCAAGAGGCTTCTCAAGGACCACCTCAAACGTCTCGCCTCAATCGACCTCGACATCCTGTCTGCTCAGGTCACACAGTCAACGGACTTCGCTGAATTTATAGACCACCATCCGTGGTTGTCGTCAATGAAGTTGGTCGTGAAACCGGACATGCTCTTCGGGAAGCGTGGAAAGAGTGGCTTAGTGGCTCTCAATTTGGACATAGCTGAAGTCGCTGAGTTCGTTAAAGCACGCCTCGGCGTTGAGGTTGAGATGGGAGGTTGCAAGGCGCCTATAACTACTTTCATTGTTGAACCGTTTGTTCCTCATGACCAAGAGTATTATTTGTCTATTGTTTCTGAAAGGCTTGGCTCCACTATCAGCTTCTCCGAATGTGGGGGCATTGATGTTGAAGAGAATTGGGATAAGTATGATGCTGTGTTTGTGCTTCCTTTCTGCAAATGCAACCTTGATAAGATGGGAAGGTTGACTGTTGATTGTCAGGTTAAAACTATATTCCTTTCAACGGAAAAACAGTTGACTCCGGAGGCTTGCGCGCCGTTGATTGCTACACTTCCCTTGGAGATTCGGGGAACAATAGGTGATTTCATACTGGGTGTGTTTGCTGTCTTCCAAGATCTAGACTTCAGTTTCCTTGAGATGAATCCATTTACACTGGTGAACGAAAAGCCATATCCTCTGGATATGAGAGGGGAATTGGATGACACTGCTGCATTCAAGAACTTCAACAAGTGGGGAGATATAGAGTTTCCATTGCCTTTTGGAAGAGTTCTCAGCCCTACAGAAAGCTTCATTCATTCATTGGATGATAAGACAAGTGCGTCGTTGAAATTTACTGTATTGAACCCAAAAGGACGCATCTGGACAATGGTAGCTGGAGGTGGTGCAAGTGTAATTTATGCCGATACTGTTGGAGATTTAGGCTATGCATCAGAGCTTGGTAACTATGCTGAGTATAGTGGAGCACCAAACGAGGAGGAAGTGCTGCAGTATGCAAGAGTTGTAATTGATTGTGCTACTGCGGACCCTGATGGCCGTAAGAGAGCCCTACTTATTGGAGGTGGCATAGCAAATTTCACTGATGTTGCTGCCACATTCAGCGGGATTATTCGAGCGCTGAAAGAGAAGGAATCAAAGCTTAAAGCAGCGCGAGTCCACATCTTTGTCAGAAGAGGTGGTCCAAACTATCAGACTGGTTTGGCAAAGATGCGTGCATTGGGAGAGGAATTGGGAGTACCAATTCAGGTTTATGGACCGGAGGCCACAATGACGGGTATCTGCAAACAAGCTATAGATTGCATCATATCAGAAGCTTAA 1347 0.4573 MARKKIREYHSKRLLKDHLKRLASIDLDILSAQVTQSTDFAEFIDHHPWLSSMKLVVKPDMLFGKRGKSGLVALNLDIAEVAEFVKARLGVEVEMGGCKAPITTFIVEPFVPHDQEYYLSIVSERLGSTISFSECGGIDVEENWDKYDAVFVLPFCKCNLDKMGRLTVDCQVKTIFLSTEKQLTPEACAPLIATLPLEIRGTIGDFILGVFAVFQDLDFSFLEMNPFTLVNEKPYPLDMRGELDDTAAFKNFNKWGDIEFPLPFGRVLSPTESFIHSLDDKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVAATFSGIIRALKEKESKLKAARVHIFVRRGGPNYQTGLAKMRALGEELGVPIQVYGPEATMTGICKQAIDCIISEA 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01946 448 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 4 261 - -
Vimu6g01946 448 Pfam ATP-grasp domain 6 142 IPR013650 -
Vimu6g01946 448 PANTHER SUCCINYL-COA SYNTHETASE BETA CHAIN 180 414 IPR005809 GO:0006099
Vimu6g01946 448 Gene3D - 166 258 - -
Vimu6g01946 448 Gene3D - 1 160 - -
Vimu6g01946 448 Pfam ATP citrate lyase citrate-binding 266 442 IPR032263 -
Vimu6g01946 448 Gene3D - 265 447 IPR016102 -
Vimu6g01946 448 FunFam ATP-citrate synthase alpha chain protein 265 447 - -
Vimu6g01946 448 SUPERFAMILY Succinyl-CoA synthetase domains 284 428 IPR016102 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01946 Vimu-Chr6 17492674 17497452 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01946 1 445 Acyl Lipid Metabolism Gene Families AT1G09430 81.573 0.0 749
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01946 K01648 - gmx:100787551 782.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01946 6 17492674 17497452 Vimu6g01946 6 17492674 17497452 ECH