Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01944 ATGGGGTTTCAAAACTTGGCCATGATGAGTTTTATGATGATCTTATGCGTCAGTCTATACGTGAATTGCATTGATATTCCTGAAAAAAGAATATTTGCCCAAAGACCTAACGATTTCATTAAACGAAATGGCACCCGTTTTTTTCTAAATGGGAAGCCACACTACTTCAACGGATTCAATGCACATTGGCTAATGATTTTTGCAGCCGACCCATCTACAAGTTCTAAGGTCACTACAGTTTTTGAACAAGCTTCCCAACATGGTTTAAACTTAGCAAGAACCATGGCATTCAATGATGGAAGTTACAGAGCCCTACAAACTTCACCTGGCGTTTATAACGAGACTGTTTTCAGGGCATTGGATGCTGTGATATCAGAAGCAGGAAAATACGAGATTCGATTGATTCTAAGCCTGGTAAATAATTGGAAAGATTTGGGTGGAAAGAATCAGTATGTTCAATGGGCAAAACAACGTGGTCAGAACGTAAGCACTGAAGATGACTTCTTCTCTAACTCCATGATTAAGCAATTCTACAAAAATCATGTCAAGACAGTGTTGACAAGAAAAAATACAGTGACTGGATTATTATACAAGGATGACCCCACCATTTTTTCGTGGGAGCTCATGAATGAACCTCGTTCTTCAGACTTTTCCGGGAAACAAGTTCAGGATTGGGTGAGTGAGATGGCTGCTTATGTGAAGTCTATTGACAACAAACACTTACTGCAAGTAGGGCTTGAAGGGTTTTATGGTAATTCAATACCAGAAAGAGGACTGATCAATCCTGATGGGTACCATACAGGAACTGATTTCATTTCTAACAACCTAGTTCCTGAAATCGATTATGCTTCCATTCATGCCTACCCTGATGAATGGATGGCGCGGTTTAACCAATCACATCAAGATGTCTTCACTGAAAAATGGGTTAGCACGCATATTCAAGATGCACAAAATGTTCTCAGAAAGCCCATTCTTCTTACGGAGTTTGGGTTAAATAAAGCATTTCGAGGATACAGCAATGGTAAAAGGGACCGATTGTATGCAAAACTTTACAAATGGGTATACGGCAGCGCTAGCCAGAGGGGAGCATGTGCTGGTGCAGCTTTTTGGCAACTATTTGTTGAAGGAATGGATAACATGGCTGATGGTTATGTTATCATCTTTCAACGGAATCCTTCCACTGCCAAAATCATCGCCCAACAATCTTTAAGGATGTCTCGTATTCGATAG 1230 0.4033 MGFQNLAMMSFMMILCVSLYVNCIDIPEKRIFAQRPNDFIKRNGTRFFLNGKPHYFNGFNAHWLMIFAADPSTSSKVTTVFEQASQHGLNLARTMAFNDGSYRALQTSPGVYNETVFRALDAVISEAGKYEIRLILSLVNNWKDLGGKNQYVQWAKQRGQNVSTEDDFFSNSMIKQFYKNHVKTVLTRKNTVTGLLYKDDPTIFSWELMNEPRSSDFSGKQVQDWVSEMAAYVKSIDNKHLLQVGLEGFYGNSIPERGLINPDGYHTGTDFISNNLVPEIDYASIHAYPDEWMARFNQSHQDVFTEKWVSTHIQDAQNVLRKPILLTEFGLNKAFRGYSNGKRDRLYAKLYKWVYGSASQRGACAGAAFWQLFVEGMDNMADGYVIIFQRNPSTAKIIAQQSLRMSRIR 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01944 409 FunFam Mannan endo-1,4-beta-mannosidase 6 36 409 - -
Vimu6g01944 409 Pfam Cellulase (glycosyl hydrolase family 5) 50 334 IPR001547 GO:0004553|GO:0071704
Vimu6g01944 409 PANTHER - 9 408 IPR045053 GO:0004553
Vimu6g01944 409 Gene3D Glycosidases 36 409 - -
Vimu6g01944 409 SUPERFAMILY (Trans)glycosidases 38 382 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01944 Vimu-Chr6 17474295 17475990 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01944 6 409 Glycoside Hydrolase AT5G66460 50.617 1.71e-148 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01944 K19355 - gmx:100788081 552.362